Rmu_ssc0000372.1_g000064
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
N/A
Physical Location & Seq
Reverse (-)
234974 .. 235633
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
atggtttcaagcgagctcaccgtgcacaccttcgattcctatcagctggaccttcgccttgatggtgacgttgtccgggatgtccacagtgttcgttctcgacaaccgcagcgcctgaaactgctacctgatcaaggcctggggagggacgtccgcacttttgcatctgtgcggacctccacttctgatcaggcctataaatatatatatatttctacatctcgaccgttcaggagtcctaagaggattgcagtttccatcaagaatgattcaactggaagctatggaggtgtcaaacctacttgtctgaattaccaaatctggaagaagttgatggaagctcacttgtataagcttgacaaggtgggatttgctaatggttctattccaaaaccaccaatgactcacacggcctatgcaaagtggaggacggcggaaggatcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 rve

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

9.86

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AciI CCGC 4 cut(s) 107, 154, 172, 434
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 134, 145
AgsI TTSAA 2 cut(s) 9, 273
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 5 cut(s) 16, 46, 282, 341, 355
AluI AGCT 5 cut(s) 16, 46, 282, 341, 355
Alw21I GWGCWC 2 cut(s) 18, 27
Alw44I GTGCAC 1 cut(s) 23
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 3 cut(s) 136, 192, 411
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 49, 174
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 10, 77
AvaII GGWCC 2 cut(s) 49, 174
BaeGI GKGCMC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 27
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 56, 266, 328
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 2 cut(s) 130, 187
BcnI CCSGG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 77, 140
Bme18I GGWCC 2 cut(s) 49, 174
BmgT120I GGNCC 2 cut(s) 49, 174
BmrFI CCNGG 2 cut(s) 77, 140
BmsI GCATC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 145
Bse1I ACTGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 134, 145
BseNI ACTGG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 3 cut(s) 138, 194, 413
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 18, 27
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 134, 145
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 3 cut(s) 138, 194, 413
Bsp1286I GDGCHC 2 cut(s) 18, 27
Bsp143I GATC 3 cut(s) 130, 187, 440
BspACI CCGC 4 cut(s) 107, 154, 172, 434
BspANI GGCC 3 cut(s) 138, 194, 413
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 3 cut(s) 130, 187, 440
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 22, 89, 228
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 133, 190, 443
BstMBI GATC 3 cut(s) 130, 187, 440
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 75, 138
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 3 cut(s) 138, 194, 413
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 49, 174
CviJI RGCY 8 cut(s) 16, 46, 138, 194, 282, 341, 355, 413
CviKI_1 RGCY 8 cut(s) 16, 46, 138, 194, 282, 341, 355, 413
DdeI CTNAG 1 cut(s) 240
DpnI GATC 3 cut(s) 132, 189, 442
DpnII GATC 3 cut(s) 130, 187, 440
Ecl136II GAGCTC 1 cut(s) 16
Eco147I AGGCCT 2 cut(s) 138, 194
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 49, 174
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 8 cut(s) 198, 204, 206, 208, 210, 285, 351, 417
FaqI GGGAC 1 cut(s) 161
FbaI TGATCA 2 cut(s) 130, 187
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 110
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 3 cut(s) 138, 194, 413
HapII CCGG 1 cut(s) 76
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 4 cut(s) 35, 235, 269, 403
HpaII CCGG 1 cut(s) 76
HphI GGTGA 2 cut(s) 10, 77
Hpy166II GTNNAC 2 cut(s) 25, 85
Hpy188I TCNGA 2 cut(s) 187, 309
Hpy188III TCNNGA 6 cut(s) 99, 222, 232, 262, 322, 444
Hpy8I GTNNAC 2 cut(s) 25, 85
HpyAV CCTTC 3 cut(s) 40, 62, 431
HpyCH4III ACNGT 3 cut(s) 22, 89, 228
HpyCH4IV ACGT 2 cut(s) 69, 150
HpyCH4V TGCA 4 cut(s) 25, 164, 251, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 2 cut(s) 69, 150
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 1 cut(s) 112
Ksp22I TGATCA 2 cut(s) 130, 187
Kzo9I GATC 3 cut(s) 130, 187, 440
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 173
MaeII ACGT 2 cut(s) 69, 150
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 132, 189, 442
MboI GATC 3 cut(s) 130, 187, 440
MboII GAAGA 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 18, 27
MluCI AATT 1 cut(s) 310
MlyI GAGTC 2 cut(s) 244, 397
MnlI CCTC 5 cut(s) 138, 187, 237, 281, 420
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 77, 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 130, 187, 440
NmuCI GTSAC 1 cut(s) 65
PceI AGGCCT 2 cut(s) 138, 194
PfeI GAWTC 2 cut(s) 35, 269
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 2 cut(s) 243, 397
PpsI GAGTC 2 cut(s) 243, 397
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspPI GGNCC 2 cut(s) 49, 174
PstNI CAGNNNCTG 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 46
SacI GAGCTC 1 cut(s) 18
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 130, 187, 440
Sau96I GGNCC 2 cut(s) 49, 174
SchI GAGTC 2 cut(s) 244, 397
ScrFI CCNGG 2 cut(s) 77, 140
SduI GDGCHC 2 cut(s) 18, 27
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 2 cut(s) 49, 174
Sse9I AATT 1 cut(s) 310
SseBI AGGCCT 2 cut(s) 138, 194
SsiI CCGC 4 cut(s) 107, 154, 172, 434
SstI GAGCTC 1 cut(s) 18
StuI AGGCCT 2 cut(s) 138, 194
StyD4I CCNGG 2 cut(s) 75, 138
TaaI ACNGT 3 cut(s) 22, 89, 228
TaiI ACGT 2 cut(s) 72, 153
TaqI TCGA 3 cut(s) 33, 100, 223
TasI AATT 1 cut(s) 310
TfiI GAWTC 2 cut(s) 35, 269
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 65
TspRI CASTG 1 cut(s) 94
Tth111I GACNNNGTC 1 cut(s) 71
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 49, 174
XagI CCTNNNNNAGG 1 cut(s) 132
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.