Rmu_ssc0000386.1_g000058

Belongs to the universal ribosomal protein uL14 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000386.1
N/A
Physical Location & Seq
Reverse (-)
306232 .. 307904
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
atgtcaaagcaagggaggggagggtcggccaaaaacaagtttcggatgtcgctgggtctgccggtggcggtgacgatcaactgcgccaacaacaccatagccatgaacctctacatcatatcagtgaaggggatcaagtggcgcctcaaccgtctgtcatcggcctgcgtcggcgacatggtgatggccatcatgaagaagggaaagcaggatctgaggaagaagacccgaagcacgaccctaccggcgctactccttccggccacggcacaccggcggaccaccggcatcgtcttcgtctcgctgtcgccagaaacctcctatccttggatcgcgcatgcactgaacggagaaggggactcaacgattgaaagttccgagacttctccgacgatctctgcaatttccggcgattctggccaccgtttaggcctcctgtggtctaggcaagaacacccagagcacccaggaggacgttcaggcagcctaggcggccgcccaaattctatccgcctaaggcttccaatttgccattactcgcctcggtctgctgccacccagcgcctaggcggcctgggcggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

194

Amino Acids

20.78

Weight (kDa)

10.78

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 21 - 95 8.8e-07 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AccII CGCG 1 cut(s) 335
AciI CCGC 7 cut(s) 68, 277, 492, 496, 511, 570, 579
AclWI GGATC 3 cut(s) 140, 219, 338
AcoI YGGCCR 5 cut(s) 27, 186, 261, 418, 493
AcsI RAATTY 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 1 cut(s) 371
AjnI CCWGG 2 cut(s) 466, 573
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 304, 374
AlwI GGATC 3 cut(s) 140, 219, 338
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 8 cut(s) 27, 162, 186, 261, 418, 430, 493, 571
ApeKI GCWGC 2 cut(s) 483, 551
ApoI RAATTY 1 cut(s) 502
AspA2I CCTAGG 2 cut(s) 487, 565
AspLEI GCGC 5 cut(s) 86, 144, 250, 337, 564
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 82, 193
AvaII GGWCC 1 cut(s) 279
AvrII CCTAGG 2 cut(s) 487, 565
AxyI CCTNAGG 1 cut(s) 515
BalI TGGCCA 2 cut(s) 188, 420
BanI GGYRCC 1 cut(s) 141
BbsI GAAGAC 2 cut(s) 230, 286
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 495, 538
BccI CCATC 2 cut(s) 178, 197
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 2 cut(s) 468, 575
BcoDI GTCTC 2 cut(s) 304, 374
BfaI CTAG 3 cut(s) 444, 488, 566
BfoI RGCGCY 3 cut(s) 145, 251, 565
BglI GCCNNNNNGGC 3 cut(s) 492, 570, 579
BisI GCNGC 6 cut(s) 484, 493, 496, 552, 571, 580
BlnI CCTAGG 2 cut(s) 487, 565
BlsI GCNGC 6 cut(s) 485, 494, 497, 553, 572, 581
Bme1390I CCNGG 2 cut(s) 468, 575
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 468, 575
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 230, 286
BsaBI GATNNNNATC 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 7 cut(s) 264, 326, 466, 487, 542, 565, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 4 cut(s) 61, 244, 273, 284
Bse21I CCTNAGG 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 2 cut(s) 468, 575
BseDI CCNNGG 7 cut(s) 264, 326, 466, 487, 542, 565, 574
BseGI GGATG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 493
BseXI GCAGC 2 cut(s) 495, 538
BseYI CCCAGC 2 cut(s) 52, 558
Bsh1236I CGCG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 8 cut(s) 29, 164, 188, 263, 420, 432, 495, 573
BshNI GGYRCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 6 cut(s) 62, 245, 260, 274, 285, 408
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 304, 374
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 8 cut(s) 29, 164, 188, 263, 420, 432, 495, 573
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 5 cut(s) 75, 132, 211, 330, 393
BspACI CCGC 7 cut(s) 68, 277, 492, 496, 511, 570, 579
BspANI GGCC 8 cut(s) 29, 164, 188, 263, 420, 432, 495, 573
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 3 cut(s) 140, 219, 338
BspT107I GGYRCC 1 cut(s) 141
BsrFI RCCGGY 4 cut(s) 61, 244, 273, 284
BssAI RCCGGY 4 cut(s) 61, 244, 273, 284
BssECI CCNNGG 7 cut(s) 264, 326, 466, 487, 542, 565, 574
BssMI GATC 5 cut(s) 75, 132, 211, 330, 393
BssNI GRCGYC 1 cut(s) 142
BssT1I CCWWGG 3 cut(s) 326, 487, 565
Bst2UI CCWGG 2 cut(s) 468, 575
Bst4CI ACNGT 2 cut(s) 152, 425
BstACI GRCGYC 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 166, 339
BstDEI CTNAG 2 cut(s) 215, 515
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 3 cut(s) 145, 251, 565
BstHHI GCGC 5 cut(s) 86, 144, 250, 337, 564
BstKTI GATC 5 cut(s) 78, 135, 214, 333, 396
BstMAI GTCTC 2 cut(s) 304, 374
BstMBI GATC 5 cut(s) 75, 132, 211, 330, 393
BstMCI CGRYCG 1 cut(s) 496
BstMWI GCNNNNNNNGC 7 cut(s) 58, 417, 489, 492, 570, 576, 579
BstNI CCWGG 2 cut(s) 468, 575
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 466, 573
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 495, 538
BstV2I GAAGAC 2 cut(s) 230, 286
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 515
BsuRI GGCC 8 cut(s) 29, 164, 188, 263, 420, 432, 495, 573
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 129, 341
Cac8I GCNNGC 2 cut(s) 166, 339
CaiI CAGNNNCTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 192
CciNI GCGGCCGC 1 cut(s) 493
CfoI GCGC 5 cut(s) 86, 144, 250, 337, 564
Cfr10I RCCGGY 4 cut(s) 61, 244, 273, 284
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 157
CviAII CATG 4 cut(s) 103, 178, 193, 338
DdeI CTNAG 2 cut(s) 215, 515
DinI GGCGCC 1 cut(s) 143
DpnI GATC 5 cut(s) 77, 134, 213, 332, 395
DpnII GATC 5 cut(s) 75, 132, 211, 330, 393
EaeI YGGCCR 5 cut(s) 27, 186, 261, 418, 493
EagI CGGCCG 1 cut(s) 493
EciI GGCGGA 2 cut(s) 292, 500
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 3 cut(s) 326, 487, 565
Eco147I AGGCCT 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 493
Eco81I CCTNAGG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 466, 573
EcoT14I CCWWGG 3 cut(s) 326, 487, 565
EgeI GGCGCC 1 cut(s) 143
EheI GGCGCC 1 cut(s) 143
ErhI CCWWGG 3 cut(s) 326, 487, 565
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 4 cut(s) 106, 181, 196, 341
FaiI YATR 6 cut(s) 98, 104, 119, 179, 194, 339
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 102, 177, 192, 337
Fnu4HI GCNGC 6 cut(s) 484, 493, 496, 552, 571, 580
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 6 cut(s) 484, 493, 496, 552, 571, 580
FspBI CTAG 3 cut(s) 444, 488, 566
GlaI GCGC 5 cut(s) 85, 143, 249, 336, 563
GluI GCNGC 6 cut(s) 484, 493, 496, 552, 571, 580
GsaI CCCAGC 2 cut(s) 56, 562
HaeII RGCGCY 3 cut(s) 145, 251, 565
HaeIII GGCC 8 cut(s) 29, 164, 188, 263, 420, 432, 495, 573
HapII CCGG 6 cut(s) 62, 245, 260, 274, 285, 408
HgaI GACGC 1 cut(s) 157
HhaI GCGC 5 cut(s) 86, 144, 250, 337, 564
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 4 cut(s) 106, 181, 196, 341
Hin6I GCGC 5 cut(s) 84, 142, 248, 335, 562
HinP1I GCGC 5 cut(s) 84, 142, 248, 335, 562
HinfI GANTC 2 cut(s) 359, 413
HpaII CCGG 6 cut(s) 62, 245, 260, 274, 285, 408
HphI GGTGA 2 cut(s) 82, 193
Hpy188I TCNGA 4 cut(s) 45, 216, 379, 390
Hpy188III TCNNGA 1 cut(s) 193
Hpy99I CGWCG 2 cut(s) 173, 394
HpyAV CCTTC 4 cut(s) 121, 193, 266, 347
HpyCH4III ACNGT 2 cut(s) 152, 425
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 341, 401
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 417, 489, 492, 570, 576, 579
HpyF3I CTNAG 2 cut(s) 215, 515
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 4 cut(s) 106, 181, 196, 341
HspAI GCGC 5 cut(s) 84, 142, 248, 335, 562
KasI GGCGCC 1 cut(s) 141
Kzo9I GATC 5 cut(s) 75, 132, 211, 330, 393
Lsp1109I GCAGC 2 cut(s) 495, 538
LweI GCATC 1 cut(s) 297
MaeI CTAG 3 cut(s) 444, 488, 566
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 1 cut(s) 70
MalI GATC 5 cut(s) 77, 134, 213, 332, 395
MboI GATC 5 cut(s) 75, 132, 211, 330, 393
MboII GAAGA 4 cut(s) 208, 232, 235, 286
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 465
MlsI TGGCCA 2 cut(s) 188, 420
MluCI AATT 3 cut(s) 402, 502, 525
MluNI TGGCCA 2 cut(s) 188, 420
Mly113I GGCGCC 1 cut(s) 142
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 9 cut(s) 9, 14, 119, 155, 210, 328, 443, 464, 552
Mox20I TGGCCA 2 cut(s) 188, 420
MscI TGGCCA 2 cut(s) 188, 420
MslI CAYNNNNRTG 3 cut(s) 101, 122, 182
Msp20I TGGCCA 2 cut(s) 188, 420
MspI CCGG 6 cut(s) 62, 245, 260, 274, 285, 408
MspR9I CCNGG 2 cut(s) 468, 575
MvaI CCWGG 2 cut(s) 468, 575
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 7 cut(s) 58, 417, 489, 492, 570, 576, 579
NarI GGCGCC 1 cut(s) 142
NdeII GATC 5 cut(s) 75, 132, 211, 330, 393
NlaIII CATG 4 cut(s) 106, 181, 196, 341
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 70
NotI GCGGCCGC 1 cut(s) 493
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PagI TCATGA 1 cut(s) 192
PceI AGGCCT 1 cut(s) 432
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 6 cut(s) 485, 494, 497, 553, 572, 581
PleI GAGTC 1 cut(s) 353
PluTI GGCGCC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 466, 573
PspFI CCCAGC 2 cut(s) 52, 558
PspGI CCWGG 2 cut(s) 466, 573
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 211
RseI CAYNNNNRTG 3 cut(s) 101, 122, 182
SatI GCNGC 6 cut(s) 484, 493, 496, 552, 571, 580
Sau3AI GATC 5 cut(s) 75, 132, 211, 330, 393
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 2 cut(s) 468, 575
SduI GDGCHC 1 cut(s) 465
SetI ASST 3 cut(s) 111, 320, 478
SfaNI GCATC 1 cut(s) 297
SfoI GGCGCC 1 cut(s) 143
SgrAI CRCCGGYG 1 cut(s) 273
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 3 cut(s) 101, 122, 182
SphI GCATGC 1 cut(s) 341
Sse9I AATT 3 cut(s) 402, 502, 525
SseBI AGGCCT 1 cut(s) 432
SsiI CCGC 7 cut(s) 68, 277, 492, 496, 511, 570, 579
SspDI GGCGCC 1 cut(s) 141
SspMI CTAG 3 cut(s) 444, 488, 566
StuI AGGCCT 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 466, 573
StyI CCWWGG 3 cut(s) 326, 487, 565
TaaI ACNGT 2 cut(s) 152, 425
TaiI ACGT 1 cut(s) 478
TaqII GACCGA 1 cut(s) 534
TasI AATT 3 cut(s) 402, 502, 525
TauI GCSGC 4 cut(s) 495, 498, 573, 582
TfiI GAWTC 1 cut(s) 413
TscAI CASTG 2 cut(s) 129, 348
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 483, 551
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 119, 209
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 2 cut(s) 129, 348
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 502
XceI RCATGY 1 cut(s) 341
XmaJI CCTAGG 2 cut(s) 487, 565
XspI CTAG 3 cut(s) 444, 488, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.