Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000387.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

188031 .. 188561

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggccactctccaacaaaccccaatctctctccaatccaaaaccccaccgccaccgctctcctccgccctcaccgccagatccaccgccgtctccttctcctccacattcacccccctcaacctcaaactcaccgccgcagcagcatccacctccgtccgccgcggaggcggcgcgtgcggcgcccggatgaacgccaccgccgccgcaagctacgcggcggctctggcggacgtggcgatatccaacaacaccctggacgtcaccgtcgccgacgtggagaagatcgatgagttcttcgcggagccgtcggtgttcgacttcttcaccaaccccacagtcggcctggagaagaagcgcggcgtcctcgacgaaatcgccaagtcgtcggcgctgcagccccacacggtgaacttcctcaacattttagttgaagccaagagaatcgacgtcatcaaggacattgtcaaggagtttgagatcgatatttttggatgctgtaatcggaaaaagccatgtttgaaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

176

Amino Acids

18.72

Weight (kDa)

8.36

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	69 - 160	4.1e-18	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	2 cut(s)	264, 453
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	5 cut(s)	165, 176, 218, 302, 360
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	4 cut(s)	183, 261, 363, 450
AdeI	CACNNNGTG	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	434, 523
AjiI	CACGTC	2 cut(s)	235, 277
AjnI	CCWGG	2 cut(s)	255, 345
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	3, 343
ApeKI	GCWGC	4 cut(s)	140, 143, 394, 397
AspLEI	GCGC	4 cut(s)	176, 185, 360, 394
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	6 cut(s)	64, 103, 124, 256, 319, 421
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	182
BbvI	GCAGC	4 cut(s)	152, 155, 381, 409
BceAI	ACGGC	2 cut(s)	74, 292
BciT130I	CCWGG	2 cut(s)	257, 347
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	395
BfoI	RGCGCY	2 cut(s)	186, 395
BglI	GCCNNNNNGGC	1 cut(s)	168
Bme1390I	CCNGG	3 cut(s)	187, 257, 347
BmgBI	CACGTC	2 cut(s)	235, 277
BmiI	GGNNCC	2 cut(s)	184, 306
BmrFI	CCNGG	3 cut(s)	187, 257, 347
BmsI	GCATC	2 cut(s)	155, 485
BpmI	CTGGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	187
Bsa29I	ATCGAT	2 cut(s)	288, 483
BsaHI	GRCGYC	4 cut(s)	183, 261, 363, 450
BsaJI	CCNNGG	2 cut(s)	163, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	257, 347
BseCI	ATCGAT	2 cut(s)	288, 483
BseDI	CCNNGG	2 cut(s)	163, 255
BseGI	GGATG	3 cut(s)	146, 195, 500
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	52, 91
BseXI	GCAGC	4 cut(s)	152, 155, 381, 409
Bsh1236I	CGCG	5 cut(s)	165, 176, 218, 302, 360
BshFI	GGCC	2 cut(s)	5, 345
BshNI	GGYRCC	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	288, 483
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	5, 345
Bsp143I	GATC	3 cut(s)	80, 285, 480
BspANI	GGCC	2 cut(s)	5, 345
BspDI	ATCGAT	2 cut(s)	288, 483
BspFNI	CGCG	5 cut(s)	165, 176, 218, 302, 360
BspLI	GGNNCC	2 cut(s)	184, 306
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	163, 255
BssMI	GATC	3 cut(s)	80, 285, 480
BssNI	GRCGYC	4 cut(s)	183, 261, 363, 450
Bst2UI	CCWGG	2 cut(s)	257, 347
Bst4CI	ACNGT	3 cut(s)	268, 340, 409
BstACI	GRCGYC	4 cut(s)	183, 261, 363, 450
BstC8I	GCNNGC	2 cut(s)	178, 211
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	146, 195, 500
BstFNI	CGCG	5 cut(s)	165, 176, 218, 302, 360
BstH2I	RGCGCY	2 cut(s)	186, 395
BstHHI	GCGC	4 cut(s)	176, 185, 360, 394
BstKTI	GATC	3 cut(s)	83, 288, 483
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	3 cut(s)	80, 285, 480
BstNI	CCWGG	2 cut(s)	257, 347
BstSCI	CCNGG	3 cut(s)	185, 255, 345
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	5 cut(s)	165, 176, 218, 302, 360
BstV1I	GCAGC	4 cut(s)	152, 155, 381, 409
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	2 cut(s)	288, 483
BsuRI	GGCC	2 cut(s)	5, 345
BsuTUI	ATCGAT	2 cut(s)	288, 483
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	2 cut(s)	235, 277
BtsCI	GGATG	3 cut(s)	146, 195, 500
Cac8I	GCNNGC	2 cut(s)	178, 211
CfoI	GCGC	4 cut(s)	176, 185, 360, 394
Cfr42I	CCGCGG	1 cut(s)	166
ClaI	ATCGAT	2 cut(s)	288, 483
CseI	GACGC	1 cut(s)	352
CviAII	CATG	1 cut(s)	516
CviJI	RGCY	8 cut(s)	5, 213, 224, 307, 345, 400, 437, 514
CviKI_1	RGCY	8 cut(s)	5, 213, 224, 307, 345, 400, 437, 514
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	3 cut(s)	82, 287, 482
DpnII	GATC	3 cut(s)	80, 285, 480
DraIII	CACNNNGTG	1 cut(s)	409
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	3 cut(s)	55, 149, 245
Eco32I	GATATC	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	255, 345
EcoRV	GATATC	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	519
FaiI	YATR	2 cut(s)	517, 529
FatI	CATG	1 cut(s)	515
FokI	GGATG	3 cut(s)	133, 202, 507
GlaI	GCGC	4 cut(s)	175, 184, 359, 393
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	2 cut(s)	186, 395
HaeIII	GGCC	2 cut(s)	5, 345
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	4 cut(s)	176, 185, 360, 394
Hin1I	GRCGYC	4 cut(s)	183, 261, 363, 450
Hin1II	CATG	1 cut(s)	519
Hin6I	GCGC	4 cut(s)	174, 183, 358, 392
HinP1I	GCGC	4 cut(s)	174, 183, 358, 392
HinfI	GANTC	1 cut(s)	444
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	6 cut(s)	64, 103, 124, 256, 319, 421
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	507
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	6 cut(s)	272, 278, 313, 374, 391, 452
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	3 cut(s)	268, 340, 409
HpyCH4IV	ACGT	4 cut(s)	234, 261, 276, 450
HpyCH4V	TGCA	1 cut(s)	397
HpySE526I	ACGT	4 cut(s)	234, 261, 276, 450
Hsp92I	GRCGYC	4 cut(s)	183, 261, 363, 450
Hsp92II	CATG	1 cut(s)	519
HspAI	GCGC	4 cut(s)	174, 183, 358, 392
KasI	GGCGCC	1 cut(s)	182
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	80, 285, 480
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	91, 200, 212, 242, 269, 332, 359
Lsp1109I	GCAGC	4 cut(s)	152, 155, 381, 409
LweI	GCATC	2 cut(s)	155, 485
MaeII	ACGT	4 cut(s)	234, 261, 276, 450
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	82, 287, 482
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	80, 285, 480
MboII	GAAGA	4 cut(s)	289, 295, 316, 364
MflI	RGATCY	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	183
MmeI	TCCRAC	2 cut(s)	37, 270
MnlI	CCTC	9 cut(s)	73, 80, 112, 128, 134, 161, 163, 377, 428
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	3 cut(s)	187, 257, 347
MvaI	CCWGG	2 cut(s)	257, 347
MvnI	CGCG	5 cut(s)	165, 176, 218, 302, 360
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	80, 285, 480
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	2 cut(s)	184, 306
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	444
PflFI	GACNNNGTC	1 cut(s)	464
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	255, 345
PspGI	CCWGG	2 cut(s)	255, 345
PspN4I	GGNNCC	2 cut(s)	184, 306
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	464
SacII	CCGCGG	1 cut(s)	166
Sau3AI	GATC	3 cut(s)	80, 285, 480
ScrFI	CCNGG	3 cut(s)	187, 257, 347
SetI	ASST	7 cut(s)	126, 155, 215, 237, 264, 279, 453
SfaNI	GCATC	2 cut(s)	155, 485
SfcI	CTRYAG	1 cut(s)	395
SfoI	GGCGCC	1 cut(s)	184
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SspDI	GGCGCC	1 cut(s)	182
StyD4I	CCNGG	3 cut(s)	185, 255, 345
TaaI	ACNGT	3 cut(s)	268, 340, 409
TaiI	ACGT	4 cut(s)	237, 264, 279, 453
TaqI	TCGA	5 cut(s)	288, 318, 369, 447, 483
TauI	GCSGC	9 cut(s)	140, 165, 174, 183, 206, 209, 221, 224, 363
TfiI	GAWTC	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	140, 143, 394, 397
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 343
ZraI	GACGTC	2 cut(s)	262, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.