Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000392.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

34126 .. 34861

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ctgggtggcatcgtcaccttcagaggcaatcaagagctcgcgagacaatgcaactccttgactgttagaaggggacaccgcaggcgagaggtacttctaacctcatacctaccctccccatccgacaagcccgatgatctaagggaagatcccgaaatcccagatgatcacggtacacgcagcaaaaagaaggacgataagcccaaactcaagcacccgagaccatatgctttggaagacctgatatcggtctccatttccgatgcacaactagatagaaaagttaagatcgggtccaaaatggacccgcacaaaaagaaggacgataagcccaaactcaagcacccgagaccatatgctttggaagacctgatatcggtctccatttccgatgcacaactagatagaaaagttaagatcgggtccaaaatggacccgcagttccaagcagagctcgtcgccttcatcaaaacccgactgaaagtgttcgcctggtcatacgccgatatgccaggaatctctccagatctgttgacccacaaactcaccatctccccagacgttcccccagttcgccaaaaacgaagggccttcacgaaagaaaaatacaaagggatccaagccgaagtcaagaaactccaagacatcgggtttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

219

Amino Acids

24.98

Weight (kDa)

9.76

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	3 cut(s)	79, 308, 437
AclWI	GGATC	3 cut(s)	143, 610, 623
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	2 cut(s)	93, 175
AfiI	CCNNNNNNNGG	2 cut(s)	247, 376
AjnI	CCWGG	2 cut(s)	491, 511
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	37, 454
AluI	AGCT	2 cut(s)	37, 454
Alw21I	GWGCWC	2 cut(s)	39, 456
Alw26I	GTCTC	5 cut(s)	37, 214, 256, 343, 385
AlwI	GGATC	3 cut(s)	143, 610, 623
Ama87I	CYCGRG	2 cut(s)	217, 346
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	180
ArsI	GACNNNNNNTTYG	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	5 cut(s)	294, 304, 423, 433, 588
AsuHPI	GGTGA	2 cut(s)	7, 538
AvaI	CYCGRG	2 cut(s)	217, 346
AvaII	GGWCC	4 cut(s)	294, 304, 423, 433
BamHI	GGATCC	1 cut(s)	615
BanII	GRGCYC	2 cut(s)	39, 456
BbsI	GAAGAC	2 cut(s)	243, 372
Bbv12I	GWGCWC	2 cut(s)	39, 456
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	127, 557
BciT130I	CCWGG	2 cut(s)	493, 513
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	5 cut(s)	37, 214, 256, 343, 385
BfaI	CTAG	2 cut(s)	272, 401
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	493, 513
Bme18I	GGWCC	4 cut(s)	294, 304, 423, 433
BmeT110I	CYCGRG	2 cut(s)	217, 346
BmgT120I	GGNCC	5 cut(s)	294, 304, 423, 433, 588
BmiI	GGNNCC	5 cut(s)	295, 306, 424, 435, 617
BmrFI	CCNGG	2 cut(s)	493, 513
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	3 cut(s)	18, 253, 382
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	2 cut(s)	243, 372
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	194, 323
BsaI	GGTCTC	4 cut(s)	214, 256, 343, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 376
Bse1I	ACTGG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	493, 513
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	247, 376
BseNI	ACTGG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	590
BsiHKAI	GWGCWC	2 cut(s)	39, 456
BsiHKCI	CYCGRG	2 cut(s)	217, 346
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	247, 376
BsmAI	GTCTC	5 cut(s)	37, 214, 256, 343, 385
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	590
Bso31I	GGTCTC	4 cut(s)	214, 256, 343, 385
BsoBI	CYCGRG	2 cut(s)	217, 346
Bsp1286I	GDGCHC	2 cut(s)	39, 456
Bsp143I	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	3 cut(s)	79, 308, 437
BspANI	GGCC	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	5 cut(s)	295, 306, 424, 435, 617
BspPI	GGATC	3 cut(s)	143, 610, 623
BspTNI	GGTCTC	4 cut(s)	214, 256, 343, 385
BsrI	ACTGG	1 cut(s)	569
BssMI	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
Bst2UI	CCWGG	2 cut(s)	493, 513
Bst4CI	ACNGT	2 cut(s)	64, 173
BstC8I	GCNNGC	2 cut(s)	39, 83
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	7 cut(s)	139, 151, 169, 291, 420, 529, 618
BstMAI	GTCTC	5 cut(s)	37, 214, 256, 343, 385
BstMBI	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
BstNI	CCWGG	2 cut(s)	493, 513
BstSCI	CCNGG	2 cut(s)	491, 511
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	2 cut(s)	243, 372
BstX2I	RGATCY	3 cut(s)	148, 526, 615
BstYI	RGATCY	3 cut(s)	148, 526, 615
BsuRI	GGCC	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	119
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	39, 83
Cfr13I	GGNCC	5 cut(s)	294, 304, 423, 433, 588
Csp6I	GTAC	2 cut(s)	92, 174
CviJI	RGCY	7 cut(s)	37, 130, 202, 331, 454, 590, 623
CviKI_1	RGCY	7 cut(s)	37, 130, 202, 331, 454, 590, 623
CviQI	GTAC	2 cut(s)	92, 174
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	7 cut(s)	138, 150, 168, 290, 419, 528, 617
DpnII	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
Ecl136II	GAGCTC	2 cut(s)	37, 454
Eco24I	GRGCYC	2 cut(s)	39, 456
Eco31I	GGTCTC	4 cut(s)	214, 256, 343, 385
Eco32I	GATATC	2 cut(s)	246, 375
Eco47I	GGWCC	4 cut(s)	294, 304, 423, 433
Eco53kI	GAGCTC	2 cut(s)	37, 454
Eco57I	CTGAAG	1 cut(s)	4
Eco88I	CYCGRG	2 cut(s)	217, 346
EcoICRI	GAGCTC	2 cut(s)	37, 454
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	491, 511
EcoRV	GATATC	2 cut(s)	246, 375
EcoT38I	GRGCYC	2 cut(s)	39, 456
FaiI	YATR	7 cut(s)	106, 226, 228, 355, 357, 499, 509
FaqI	GGGAC	1 cut(s)	87
FauI	CCCGC	2 cut(s)	315, 444
FauNDI	CATATG	2 cut(s)	226, 355
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	2 cut(s)	39, 456
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	272, 401
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	1 cut(s)	516
HphI	GGTGA	2 cut(s)	7, 538
Hpy166II	GTNNAC	2 cut(s)	176, 534
Hpy188I	TCNGA	5 cut(s)	23, 124, 262, 391, 659
Hpy188III	TCNNGA	6 cut(s)	32, 40, 152, 524, 595, 631
Hpy8I	GTNNAC	2 cut(s)	176, 534
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	7 cut(s)	28, 63, 184, 313, 472, 579, 601
HpyCH4III	ACNGT	2 cut(s)	64, 173
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	51, 266, 395
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	3 cut(s)	18, 253, 382
MaeI	CTAG	2 cut(s)	272, 401
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	7 cut(s)	138, 150, 168, 290, 419, 528, 617
MboI	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
MboII	GAAGA	3 cut(s)	158, 248, 377
MflI	RGATCY	3 cut(s)	148, 526, 615
MhlI	GDGCHC	2 cut(s)	39, 456
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	17, 82, 112, 124
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	285, 414
MspR9I	CCNGG	2 cut(s)	493, 513
MvaI	CCWGG	2 cut(s)	493, 513
MvnI	CGCG	1 cut(s)	41
NdeI	CATATG	2 cut(s)	226, 355
NdeII	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
NlaIV	GGNNCC	5 cut(s)	295, 306, 424, 435, 617
NmuCI	GTSAC	1 cut(s)	13
NruI	TCGCGA	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	182
Psp124BI	GAGCTC	2 cut(s)	39, 456
Psp6I	CCWGG	2 cut(s)	491, 511
PspGI	CCWGG	2 cut(s)	491, 511
PspN4I	GGNNCC	5 cut(s)	295, 306, 424, 435, 617
PspPI	GGNCC	5 cut(s)	294, 304, 423, 433, 588
PsuI	RGATCY	3 cut(s)	148, 526, 615
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	2 cut(s)	93, 175
RsaNI	GTAC	2 cut(s)	92, 174
SacI	GAGCTC	2 cut(s)	39, 456
SaqAI	TTAA	2 cut(s)	285, 414
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	7 cut(s)	136, 148, 166, 288, 417, 526, 615
Sau96I	GGNCC	5 cut(s)	294, 304, 423, 433, 588
ScrFI	CCNGG	2 cut(s)	493, 513
SduI	GDGCHC	2 cut(s)	39, 456
SetI	ASST	9 cut(s)	20, 39, 93, 104, 111, 243, 372, 456, 564
SfaNI	GCATC	3 cut(s)	18, 253, 382
SinI	GGWCC	4 cut(s)	294, 304, 423, 433
SmlI	CTYRAG	2 cut(s)	209, 338
SmoI	CTYRAG	2 cut(s)	209, 338
SsiI	CCGC	3 cut(s)	79, 308, 437
SspMI	CTAG	2 cut(s)	272, 401
SstI	GAGCTC	2 cut(s)	39, 456
StyD4I	CCNGG	2 cut(s)	491, 511
TaaI	ACNGT	2 cut(s)	64, 173
TaiI	ACGT	1 cut(s)	564
TaqII	GACCGA	2 cut(s)	238, 367
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	2 cut(s)	285, 414
Tru9I	TTAA	2 cut(s)	285, 414
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	454
VpaK11BI	GGWCC	4 cut(s)	294, 304, 423, 433
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	272, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.