Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

172267 .. 172590

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggatcagcagctgatgatggtgaagaatgaagagaccccagctgggaggcgccgcttgagcaccgctgatcgcgaggcaaaccaggcagcacggtgtgtcaagagacgccgaagagacccagctgctgttgctgttgacattagcaagagcgagctgcctctgccagaaaagccagccgatccagcttctgcagctaccacaatgaagagaagctcaaggtttcgcggcgtcagcagacataggtggactggccgatttgaagctcacttgtgggacaagctttcttggaatataacacagagggcgatgaatttaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

107

Amino Acids

12.29

Weight (kDa)

11.23

Isoelectric Point (pI)

73.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	2 cut(s)	75, 228
AciI	CCGC	3 cut(s)	55, 66, 228
AclWI	GGATC	2 cut(s)	12, 176
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	313
AcyI	GRCGYC	3 cut(s)	52, 109, 231
AdeI	CACNNNGTG	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	9 cut(s)	13, 44, 125, 157, 188, 197, 216, 266, 283
AluI	AGCT	9 cut(s)	13, 44, 125, 157, 188, 197, 216, 266, 283
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	3 cut(s)	29, 100, 111
AlwI	GGATC	2 cut(s)	12, 176
AlwNI	CAGNNNCTG	3 cut(s)	13, 128, 191
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	5 cut(s)	10, 89, 125, 157, 194
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	5 cut(s)	22, 101, 112, 144, 206
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	3 cut(s)	29, 100, 111
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	7 cut(s)	11, 55, 90, 126, 158, 195, 229
BlsI	GCNGC	7 cut(s)	12, 56, 91, 127, 159, 196, 230
Bme1390I	CCNGG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	79, 202
BsaHI	GRCGYC	3 cut(s)	52, 109, 231
BsaI	GGTCTC	2 cut(s)	29, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	5 cut(s)	22, 101, 112, 144, 206
BseYI	CCCAGC	3 cut(s)	40, 44, 121
Bsh1236I	CGCG	2 cut(s)	75, 228
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	29, 100, 111
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	2 cut(s)	29, 111
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	4, 70, 181
Bsp68I	TCGCGA	1 cut(s)	75
BspACI	CCGC	3 cut(s)	55, 66, 228
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	2 cut(s)	75, 228
BspLI	GGNNCC	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	12, 176
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	2 cut(s)	29, 111
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	4, 70, 181
BssNI	GRCGYC	3 cut(s)	52, 109, 231
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	3 cut(s)	27, 109, 203
BstACI	GRCGYC	3 cut(s)	52, 109, 231
BstC8I	GCNNGC	2 cut(s)	155, 177
BstFNI	CGCG	2 cut(s)	75, 228
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	7, 73, 184
BstMAI	GTCTC	3 cut(s)	29, 100, 111
BstMBI	GATC	3 cut(s)	4, 70, 181
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 86, 131, 163, 172, 185, 194, 234
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	2 cut(s)	75, 228
BstV1I	GCAGC	5 cut(s)	22, 101, 112, 144, 206
BsuRI	GGCC	1 cut(s)	255
BtuMI	TCGCGA	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	155, 177
CaiI	CAGNNNCTG	3 cut(s)	13, 128, 191
CfoI	GCGC	1 cut(s)	54
CseI	GACGC	2 cut(s)	117, 220
DinI	GGCGCC	1 cut(s)	53
DpnI	GATC	3 cut(s)	6, 72, 183
DpnII	GATC	3 cut(s)	4, 70, 181
DraIII	CACNNNGTG	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	3 cut(s)	27, 109, 203
EarI	CTCTTC	3 cut(s)	27, 109, 203
Eco31I	GGTCTC	2 cut(s)	29, 111
EcoRII	CCWGG	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	53
EheI	GGCGCC	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	3 cut(s)	243, 296, 322
FaqI	GGGAC	1 cut(s)	290
Fnu4HI	GCNGC	7 cut(s)	11, 55, 90, 126, 158, 195, 229
Fsp4HI	GCNGC	7 cut(s)	11, 55, 90, 126, 158, 195, 229
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	7 cut(s)	11, 55, 90, 126, 158, 195, 229
GsaI	CCCAGC	3 cut(s)	44, 48, 125
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	255
HgaI	GACGC	2 cut(s)	117, 220
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	3 cut(s)	52, 109, 231
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	281
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	139, 249
Hpy188III	TCNNGA	2 cut(s)	74, 103
Hpy8I	GTNNAC	2 cut(s)	139, 249
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 86, 131, 163, 172, 185, 194, 234
Hsp92I	GRCGYC	3 cut(s)	52, 109, 231
HspAI	GCGC	1 cut(s)	52
KasI	GGCGCC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	4, 70, 181
LpnPI	CCDG	9 cut(s)	30, 54, 71, 98, 135, 180, 189, 198, 237
Lsp1109I	GCAGC	5 cut(s)	22, 101, 112, 144, 206
MalI	GATC	3 cut(s)	6, 72, 183
MboI	GATC	3 cut(s)	4, 70, 181
MboII	GAAGA	4 cut(s)	37, 44, 126, 220
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	1 cut(s)	313
Mly113I	GGCGCC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	42, 70, 171, 297
MseI	TTAA	1 cut(s)	317
MspA1I	CMGCKG	4 cut(s)	13, 44, 68, 125
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	75, 228
MwoI	GCNNNNNNNGC	8 cut(s)	60, 86, 131, 163, 172, 185, 194, 234
NarI	GGCGCC	1 cut(s)	52
NdeII	GATC	3 cut(s)	4, 70, 181
NlaIV	GGNNCC	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	75
PkrI	GCNGC	7 cut(s)	12, 56, 91, 127, 159, 196, 230
PluTI	GGCGCC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	84
PspFI	CCCAGC	3 cut(s)	40, 44, 121
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	3 cut(s)	13, 128, 191
PvuII	CAGCTG	3 cut(s)	13, 44, 125
RruI	TCGCGA	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	7 cut(s)	11, 55, 90, 126, 158, 195, 229
Sau3AI	GATC	3 cut(s)	4, 70, 181
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	192
SfoI	GGCGCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	58, 217
SmoI	CTYRAG	2 cut(s)	58, 217
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	55, 66, 228
SspDI	GGCGCC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	96
TasI	AATT	1 cut(s)	313
TauI	GCSGC	2 cut(s)	57, 231
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseI	GCWGC	5 cut(s)	10, 89, 125, 157, 194
TspDTI	ATGAA	2 cut(s)	45, 221
XapI	RAATTY	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.