Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

320932 .. 323277

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000400.1_g000086.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atgtgtgtagatgatcagagatgggggttgggtggccttccttttcattgttttcaggtggcggcggtggttgcacagaagaaaggtgtgtggccgatggtggttttccgtcgtgtggctgaagggcgcactcgggggcggagggagtcacagcgcagcgatcgttctgctcgggctctcgagggatgggattgtggcagtgggcgatctgatctgctggtgttctacagtcgtctgggtccgcaaccaacggcgcggtggtctgagaggtgcgatggtggtggatgggctggatgtgaaaaattgtcgtgggctggggtcaacgcttgggccctcccggttttgttccaaaggttgttttttctggtgcggcgacgaagattgtcacgcagcgatcgttctgctcagactctcgagggatgggattgtggcggtgggcgatctgatctgctggtgttctacagtcgtctgggtccgcaagcaacggcgcggtggtctgagaggtgcgatggtggtggatgggctggatgggaaaaattgtcgtgggctggggtcgatgcttggaccctctcggttttgttccaaaggttgttttttctggtgtggcgacggagattgtccgtcaagggcggcgttgggatggtggtggtgcgtctggatcgggtttgccttgaacttcgcagtactcaagtttaccttaatccgcgcagttgcacatctccagccagaaagcacacaatggagggaactcgattcttcctcttgctggtacaattttgcagcttaaatacactagcagcagtccaagccaacgctaatctcaccacggaccagtctgctcttcttgctctcaaagctcatgtcaccaatggccctcaaaacatgatcttggccaactggtcaaccagcacctccgtttgcaactgggttggtgttacttgtggtgctcaccaccttcgagtcaccgtcttgaatatctcttactctggtctcacaggcacccttcctccggagctaggcaacctatcatttcttgttgagctacgcctcacaaataacagcttacacggtcccttgccccaggaattggctcatttgcacaggttgaagttggttagctttgggaacaacaactttgtgggagccattccttcatggtttgggactttgggtccttatcgaatcttcaaaccttcaatctatatggtaaccagttttcaggttctatacccactgaaatcttcaacttatctgcactccaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

421

Amino Acids

47.06

Weight (kDa)

10.16

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	998
AccB7I	CCANNNNNTGG	1 cut(s)	1087
AccII	CGCG	3 cut(s)	256, 490, 706
AccIII	TCCGGA	1 cut(s)	1009
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	2 cut(s)	92, 891
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	685, 771
AfiI	CCNNNNNNNGG	5 cut(s)	115, 766, 1009, 1016, 1087
AgsI	TTSAA	6 cut(s)	674, 973, 1108, 1189, 1197, 1245
AhdI	GACNNNNNGTC	1 cut(s)	1170
AjnI	CCWGG	1 cut(s)	1080
AluBI	AGCT	6 cut(s)	783, 857, 1015, 1042, 1062, 1119
AluI	AGCT	6 cut(s)	783, 857, 1015, 1042, 1062, 1119
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	1 cut(s)	995
AlwI	GGATC	1 cut(s)	666
Ama87I	CYCGRG	4 cut(s)	132, 171, 179, 413
Aor13HI	TCCGGA	1 cut(s)	1009
AoxI	GGCC	5 cut(s)	34, 92, 330, 871, 891
ApaI	GGGCCC	1 cut(s)	334
ApeKI	GCWGC	4 cut(s)	156, 390, 780, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	846, 878
AspLEI	GCGC	5 cut(s)	129, 156, 256, 490, 708
AspS9I	GGNCC	9 cut(s)	239, 330, 331, 473, 564, 829, 872, 1070, 1172
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	814, 856, 941, 955
AvaI	CYCGRG	4 cut(s)	132, 171, 179, 413
AvaII	GGWCC	6 cut(s)	239, 473, 564, 829, 1070, 1172
BaeGI	GKGCMC	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	893
BanI	GGYRCC	1 cut(s)	998
BanII	GRGCYC	2 cut(s)	178, 334
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	4 cut(s)	168, 402, 792, 809
BceAI	ACGGC	2 cut(s)	267, 501
BcgI	CGANNNNNNTGC	4 cut(s)	149, 183, 383, 417
BciT130I	CCWGG	1 cut(s)	1082
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	995
BfaI	CTAG	2 cut(s)	794, 1016
BfmI	CTRYAG	2 cut(s)	226, 460
BisI	GCNGC	7 cut(s)	63, 157, 371, 391, 631, 781, 798
BlsI	GCNGC	7 cut(s)	64, 158, 372, 392, 632, 782, 799
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	338, 1082
Bme18I	GGWCC	6 cut(s)	239, 473, 564, 829, 1070, 1172
BmeRI	GACNNNNNGTC	1 cut(s)	1170
BmeT110I	CYCGRG	4 cut(s)	132, 171, 179, 413
BmgT120I	GGNCC	9 cut(s)	239, 330, 331, 473, 564, 829, 872, 1070, 1172
BmiI	GGNNCC	8 cut(s)	240, 332, 474, 566, 1000, 1072, 1144, 1173
BmrFI	CCNGG	2 cut(s)	338, 1082
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	1 cut(s)	547
BmuI	ACTGGG	1 cut(s)	934
BpmI	CTGGAG	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	995
BsaJI	CCNNGG	2 cut(s)	825, 1080
BsaWI	WCCGGW	1 cut(s)	1009
BsaXI	ACNNNNNCTCC	2 cut(s)	991, 1021
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 766, 1009, 1016, 1087
Bse1I	ACTGG	4 cut(s)	832, 902, 929, 1212
BseAI	TCCGGA	1 cut(s)	1009
BseBI	CCWGG	1 cut(s)	1082
BseDI	CCNNGG	2 cut(s)	825, 1080
BseGI	GGATG	7 cut(s)	191, 290, 299, 425, 524, 533, 645
BseLI	CCNNNNNNNGG	5 cut(s)	115, 766, 1009, 1016, 1087
BseMII	CTCAG	3 cut(s)	255, 419, 489
BseNI	ACTGG	4 cut(s)	832, 902, 929, 1212
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	168, 402, 792, 809
BseYI	CCCAGC	2 cut(s)	314, 548
BsgI	GTGCAG	1 cut(s)	1238
Bsh1236I	CGCG	3 cut(s)	256, 490, 706
Bsh1285I	CGRYCG	2 cut(s)	163, 397
BshFI	GGCC	5 cut(s)	36, 94, 332, 873, 893
BshNI	GGYRCC	1 cut(s)	998
BsiEI	CGRYCG	2 cut(s)	163, 397
BsiHKAI	GWGCWC	1 cut(s)	949
BsiHKCI	CYCGRG	4 cut(s)	132, 171, 179, 413
BsiSI	CCGG	2 cut(s)	338, 1010
BslFI	GGGAC	2 cut(s)	1056, 1177
BslI	CCNNNNNNNGG	5 cut(s)	115, 766, 1009, 1016, 1087
BsmAI	GTCTC	1 cut(s)	995
BsmFI	GGGAC	2 cut(s)	1056, 1177
BsnI	GGCC	5 cut(s)	36, 94, 332, 873, 893
Bso31I	GGTCTC	1 cut(s)	995
BsoBI	CYCGRG	4 cut(s)	132, 171, 179, 413
Bsp120I	GGGCCC	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	178, 334, 949
Bsp13I	TCCGGA	1 cut(s)	1009
Bsp143I	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
BspANI	GGCC	5 cut(s)	36, 94, 332, 873, 893
BspCNI	CTCAG	3 cut(s)	256, 418, 490
BspEI	TCCGGA	1 cut(s)	1009
BspFNI	CGCG	3 cut(s)	256, 490, 706
BspLI	GGNNCC	8 cut(s)	240, 332, 474, 566, 1000, 1072, 1144, 1173
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	846
BspT107I	GGYRCC	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	995
BsrI	ACTGG	4 cut(s)	832, 902, 929, 1212
BssECI	CCNNGG	2 cut(s)	825, 1080
BssMI	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
Bst2UI	CCWGG	1 cut(s)	1082
Bst4CI	ACNGT	4 cut(s)	230, 464, 967, 1070
Bst6I	CTCTTC	1 cut(s)	846
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	264, 405, 498
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	1207
BstF5I	GGATG	7 cut(s)	191, 290, 299, 425, 524, 533, 645
BstFNI	CGCG	3 cut(s)	256, 490, 706
BstHHI	GCGC	5 cut(s)	129, 156, 256, 490, 708
BstKTI	GATC	9 cut(s)	16, 163, 209, 214, 397, 443, 448, 661, 888
BstMAI	GTCTC	1 cut(s)	995
BstMBI	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
BstMCI	CGRYCG	2 cut(s)	163, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 806, 845, 854
BstNI	CCWGG	1 cut(s)	1082
BstPI	GGTNACC	1 cut(s)	1207
BstSCI	CCNGG	2 cut(s)	336, 1080
BstSFI	CTRYAG	2 cut(s)	226, 460
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	3 cut(s)	256, 490, 706
BstV1I	GCAGC	4 cut(s)	168, 402, 792, 809
BsuRI	GGCC	5 cut(s)	36, 94, 332, 873, 893
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	2 cut(s)	288, 522
BtsCI	GGATG	7 cut(s)	191, 290, 299, 425, 524, 533, 645
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 1232
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	5 cut(s)	129, 156, 256, 490, 708
Cfr13I	GGNCC	9 cut(s)	239, 330, 331, 473, 564, 829, 872, 1070, 1172
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	684, 770
CviAII	CATG	3 cut(s)	860, 883, 1155
CviQI	GTAC	2 cut(s)	684, 770
DdeI	CTNAG	3 cut(s)	264, 405, 498
DpnI	GATC	9 cut(s)	15, 162, 208, 213, 396, 442, 447, 660, 887
DpnII	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
DriI	GACNNNNNGTC	1 cut(s)	1170
EaeI	YGGCCR	2 cut(s)	92, 891
Eam1104I	CTCTTC	1 cut(s)	846
Eam1105I	GACNNNNNGTC	1 cut(s)	1170
EarI	CTCTTC	1 cut(s)	846
EciI	GGCGGA	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	178, 334
Eco31I	GGTCTC	1 cut(s)	995
Eco47I	GGWCC	6 cut(s)	239, 473, 564, 829, 1070, 1172
Eco57I	CTGAAG	1 cut(s)	141
Eco88I	CYCGRG	4 cut(s)	132, 171, 179, 413
Eco91I	GGTNACC	1 cut(s)	1207
EcoO109I	RGGNCCY	2 cut(s)	331, 1172
EcoO65I	GGTNACC	1 cut(s)	1207
EcoRII	CCWGG	1 cut(s)	1080
EcoT38I	GRGCYC	2 cut(s)	178, 334
FaeI	CATG	3 cut(s)	863, 886, 1158
FaiI	YATR	6 cut(s)	861, 884, 1156, 1203, 1205, 1228
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	2 cut(s)	1056, 1177
FatI	CATG	3 cut(s)	859, 882, 1154
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	7 cut(s)	63, 157, 371, 391, 631, 781, 798
FokI	GGATG	7 cut(s)	198, 297, 306, 432, 531, 540, 652
FriOI	GRGCYC	2 cut(s)	178, 334
Fsp4HI	GCNGC	7 cut(s)	63, 157, 371, 391, 631, 781, 798
FspBI	CTAG	2 cut(s)	794, 1016
GlaI	GCGC	5 cut(s)	128, 155, 255, 489, 707
GluI	GCNGC	7 cut(s)	63, 157, 371, 391, 631, 781, 798
GsaI	CCCAGC	2 cut(s)	318, 552
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	5 cut(s)	36, 94, 332, 873, 893
HapII	CCGG	2 cut(s)	338, 1010
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	5 cut(s)	129, 156, 256, 490, 708
Hin1II	CATG	3 cut(s)	863, 886, 1158
Hin6I	GCGC	5 cut(s)	127, 154, 254, 488, 706
HinP1I	GCGC	5 cut(s)	127, 154, 254, 488, 706
HincII	GTYRAC	2 cut(s)	322, 903
HindII	GTYRAC	2 cut(s)	322, 903
HinfI	GANTC	5 cut(s)	146, 409, 753, 960, 1182
HpaII	CCGG	2 cut(s)	338, 1010
HphI	GGTGA	4 cut(s)	814, 856, 941, 955
Hpy166II	GTNNAC	3 cut(s)	322, 694, 903
Hpy188I	TCNGA	6 cut(s)	18, 211, 265, 408, 445, 499
Hpy188III	TCNNGA	5 cut(s)	179, 413, 656, 970, 1010
Hpy8I	GTNNAC	3 cut(s)	322, 694, 903
Hpy99I	CGWCG	3 cut(s)	114, 378, 612
HpyAV	CCTTC	6 cut(s)	47, 116, 965, 1013, 1161, 1203
HpyCH4III	ACNGT	4 cut(s)	230, 464, 967, 1070
HpyCH4V	TGCA	6 cut(s)	74, 714, 780, 921, 1099, 1255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 806, 845, 854
HpyF3I	CTNAG	3 cut(s)	264, 405, 498
Hsp92II	CATG	3 cut(s)	863, 886, 1158
HspAI	GCGC	5 cut(s)	127, 154, 254, 488, 706
Kpn2I	TCCGGA	1 cut(s)	1009
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	1012, 1142
Lsp1109I	GCAGC	4 cut(s)	168, 402, 792, 809
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	794, 1016
MaeIII	GTNAC	6 cut(s)	147, 384, 862, 934, 961, 1207
MalI	GATC	9 cut(s)	15, 162, 208, 213, 396, 442, 447, 660, 887
MboI	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
MboII	GAAGA	6 cut(s)	91, 390, 748, 833, 1177, 1233
MhlI	GDGCHC	3 cut(s)	178, 334, 949
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	4 cut(s)	302, 536, 773, 1085
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	3 cut(s)	155, 403, 969
Mox20I	TGGCCA	1 cut(s)	893
MroI	TCCGGA	1 cut(s)	1009
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	2 cut(s)	699, 785
Msp20I	TGGCCA	1 cut(s)	893
MspI	CCGG	2 cut(s)	338, 1010
MspR9I	CCNGG	2 cut(s)	338, 1082
MvaI	CCWGG	1 cut(s)	1082
MvnI	CGCG	3 cut(s)	256, 490, 706
MwoI	GCNNNNNNNGC	4 cut(s)	71, 806, 845, 854
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
NlaIII	CATG	3 cut(s)	863, 886, 1158
NlaIV	GGNNCC	8 cut(s)	240, 332, 474, 566, 1000, 1072, 1144, 1173
NmuCI	GTSAC	4 cut(s)	147, 384, 862, 961
PaeR7I	CTCGAG	2 cut(s)	179, 413
PciSI	GCTCTTC	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	753, 1182
PflMI	CCANNNNNTGG	1 cut(s)	1087
PkrI	GCNGC	7 cut(s)	64, 158, 372, 392, 632, 782, 799
Ple19I	CGATCG	2 cut(s)	163, 397
PleI	GAGTC	3 cut(s)	154, 403, 968
PpsI	GAGTC	3 cut(s)	154, 403, 968
PpuMI	RGGWCCY	1 cut(s)	1172
Psp5II	RGGWCCY	1 cut(s)	1172
Psp6I	CCWGG	1 cut(s)	1080
PspEI	GGTNACC	1 cut(s)	1207
PspFI	CCCAGC	2 cut(s)	314, 548
PspGI	CCWGG	1 cut(s)	1080
PspN4I	GGNNCC	8 cut(s)	240, 332, 474, 566, 1000, 1072, 1144, 1173
PspOMI	GGGCCC	1 cut(s)	330
PspPI	GGNCC	9 cut(s)	239, 330, 331, 473, 564, 829, 872, 1070, 1172
PspPPI	RGGWCCY	1 cut(s)	1172
PvuI	CGATCG	2 cut(s)	163, 397
RsaI	GTAC	2 cut(s)	685, 771
RsaNI	GTAC	2 cut(s)	684, 770
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	2 cut(s)	699, 785
SatI	GCNGC	7 cut(s)	63, 157, 371, 391, 631, 781, 798
Sau3AI	GATC	9 cut(s)	13, 160, 206, 211, 394, 440, 445, 658, 885
Sau96I	GGNCC	9 cut(s)	239, 330, 331, 473, 564, 829, 872, 1070, 1172
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	3 cut(s)	155, 403, 969
ScrFI	CCNGG	2 cut(s)	338, 1082
SduI	GDGCHC	3 cut(s)	178, 334, 949
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	2 cut(s)	226, 460
Sfr274I	CTCGAG	2 cut(s)	179, 413
SinI	GGWCC	6 cut(s)	239, 473, 564, 829, 1070, 1172
SlaI	CTCGAG	2 cut(s)	179, 413
SmlI	CTYRAG	3 cut(s)	179, 413, 687
SmoI	CTYRAG	3 cut(s)	179, 413, 687
Sse9I	AATT	4 cut(s)	302, 536, 773, 1085
SspMI	CTAG	2 cut(s)	794, 1016
StyD4I	CCNGG	2 cut(s)	336, 1080
TaaI	ACNGT	4 cut(s)	230, 464, 967, 1070
TaqI	TCGA	6 cut(s)	180, 414, 555, 751, 958, 1180
TasI	AATT	4 cut(s)	302, 536, 773, 1085
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	3 cut(s)	65, 373, 633
TfiI	GAWTC	2 cut(s)	753, 1182
Tru1I	TTAA	2 cut(s)	699, 785
Tru9I	TTAA	2 cut(s)	699, 785
TscAI	CASTG	2 cut(s)	205, 1239
TseFI	GTSAC	4 cut(s)	147, 384, 862, 961
TseI	GCWGC	4 cut(s)	156, 390, 780, 797
Tsp45I	GTSAC	4 cut(s)	147, 384, 862, 961
TspDTI	ATGAA	2 cut(s)	35, 1143
TspGWI	ACGGA	5 cut(s)	98, 610, 625, 842, 904
TspRI	CASTG	2 cut(s)	205, 1239
Van91I	CCANNNNNTGG	1 cut(s)	1087
VpaK11BI	GGWCC	6 cut(s)	239, 473, 564, 829, 1070, 1172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XhoI	CTCGAG	2 cut(s)	179, 413
XspI	CTAG	2 cut(s)	794, 1016
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.