Phd finger protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_plant_repro | PF25874 | 28 - 103 | 2.1e-11 | Winged helix-turn-helix domain in plant reproductive proteins |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 87 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AluBI | AGCT | 2 cut(s) | 127, 208 |
| AluI | AGCT | 2 cut(s) | 127, 208 |
| Alw21I | GWGCWC | 1 cut(s) | 172 |
| AoxI | GGCC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 1 cut(s) | 127 |
| AspLEI | GCGC | 1 cut(s) | 31 |
| BanII | GRGCYC | 1 cut(s) | 150 |
| Bbv12I | GWGCWC | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 114 |
| BceAI | ACGGC | 1 cut(s) | 102 |
| BclI | TGATCA | 1 cut(s) | 120 |
| BisI | GCNGC | 1 cut(s) | 128 |
| BlsI | GCNGC | 1 cut(s) | 129 |
| BmsI | GCATC | 2 cut(s) | 47, 266 |
| Bsa29I | ATCGAT | 1 cut(s) | 274 |
| BseCI | ATCGAT | 1 cut(s) | 274 |
| BseMII | CTCAG | 1 cut(s) | 187 |
| BseXI | GCAGC | 1 cut(s) | 114 |
| BshFI | GGCC | 1 cut(s) | 89 |
| BshVI | ATCGAT | 1 cut(s) | 274 |
| BsiHKAI | GWGCWC | 1 cut(s) | 172 |
| BsnI | GGCC | 1 cut(s) | 89 |
| Bsp1286I | GDGCHC | 2 cut(s) | 150, 172 |
| Bsp143I | GATC | 1 cut(s) | 120 |
| BspANI | GGCC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 1 cut(s) | 186 |
| BspDI | ATCGAT | 1 cut(s) | 274 |
| BssMI | GATC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 2 cut(s) | 42, 173 |
| BstHHI | GCGC | 1 cut(s) | 31 |
| BstKTI | GATC | 1 cut(s) | 123 |
| BstMBI | GATC | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 35 |
| BstNSI | RCATGY | 2 cut(s) | 29, 107 |
| BstV1I | GCAGC | 1 cut(s) | 114 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 259 |
| Bsu15I | ATCGAT | 1 cut(s) | 274 |
| BsuRI | GGCC | 1 cut(s) | 89 |
| BsuTUI | ATCGAT | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 31 |
| ClaI | ATCGAT | 1 cut(s) | 274 |
| CviAII | CATG | 4 cut(s) | 26, 56, 104, 259 |
| CviJI | RGCY | 6 cut(s) | 89, 116, 127, 148, 208, 251 |
| CviKI_1 | RGCY | 6 cut(s) | 89, 116, 127, 148, 208, 251 |
| DdeI | CTNAG | 2 cut(s) | 42, 173 |
| DpnI | GATC | 1 cut(s) | 122 |
| DpnII | GATC | 1 cut(s) | 120 |
| EaeI | YGGCCR | 1 cut(s) | 87 |
| Eco24I | GRGCYC | 1 cut(s) | 150 |
| EcoT38I | GRGCYC | 1 cut(s) | 150 |
| FaeI | CATG | 4 cut(s) | 29, 59, 107, 262 |
| FaiI | YATR | 7 cut(s) | 27, 57, 76, 105, 119, 187, 260 |
| FatI | CATG | 4 cut(s) | 25, 55, 103, 258 |
| FbaI | TGATCA | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 1 cut(s) | 128 |
| FriOI | GRGCYC | 1 cut(s) | 150 |
| Fsp4HI | GCNGC | 1 cut(s) | 128 |
| GlaI | GCGC | 1 cut(s) | 30 |
| GluI | GCNGC | 1 cut(s) | 128 |
| HaeIII | GGCC | 1 cut(s) | 89 |
| HhaI | GCGC | 1 cut(s) | 31 |
| Hin1II | CATG | 4 cut(s) | 29, 59, 107, 262 |
| Hin6I | GCGC | 1 cut(s) | 29 |
| HinP1I | GCGC | 1 cut(s) | 29 |
| HinfI | GANTC | 2 cut(s) | 271, 287 |
| Hpy166II | GTNNAC | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 3 cut(s) | 143, 212, 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 84 |
| HpyCH4IV | ACGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 4 cut(s) | 38, 109, 182, 279 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 35 |
| HpyF3I | CTNAG | 2 cut(s) | 42, 173 |
| HpySE526I | ACGT | 1 cut(s) | 166 |
| Hsp92II | CATG | 4 cut(s) | 29, 59, 107, 262 |
| HspAI | GCGC | 1 cut(s) | 29 |
| Ksp22I | TGATCA | 1 cut(s) | 120 |
| Kzo9I | GATC | 1 cut(s) | 120 |
| LpnPI | CCDG | 6 cut(s) | 98, 113, 160, 216, 292, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 114 |
| LweI | GCATC | 2 cut(s) | 47, 266 |
| MaeII | ACGT | 1 cut(s) | 166 |
| MalI | GATC | 1 cut(s) | 122 |
| MboI | GATC | 1 cut(s) | 120 |
| MfeI | CAATTG | 1 cut(s) | 151 |
| MhlI | GDGCHC | 2 cut(s) | 150, 172 |
| MluCI | AATT | 3 cut(s) | 12, 151, 264 |
| MnlI | CCTC | 1 cut(s) | 230 |
| MseI | TTAA | 2 cut(s) | 5, 225 |
| MunI | CAATTG | 1 cut(s) | 151 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 35 |
| NdeII | GATC | 1 cut(s) | 120 |
| NlaIII | CATG | 4 cut(s) | 29, 59, 107, 262 |
| NspI | RCATGY | 2 cut(s) | 29, 107 |
| PfeI | GAWTC | 2 cut(s) | 271, 287 |
| PkrI | GCNGC | 1 cut(s) | 129 |
| SaqAI | TTAA | 2 cut(s) | 5, 225 |
| SatI | GCNGC | 1 cut(s) | 128 |
| Sau3AI | GATC | 1 cut(s) | 120 |
| SduI | GDGCHC | 2 cut(s) | 150, 172 |
| SetI | ASST | 4 cut(s) | 129, 169, 210, 311 |
| SfaNI | GCATC | 2 cut(s) | 47, 266 |
| Sse9I | AATT | 3 cut(s) | 12, 151, 264 |
| TaiI | ACGT | 1 cut(s) | 169 |
| TaqI | TCGA | 1 cut(s) | 274 |
| TasI | AATT | 3 cut(s) | 12, 151, 264 |
| TfiI | GAWTC | 2 cut(s) | 271, 287 |
| Tru1I | TTAA | 2 cut(s) | 5, 225 |
| Tru9I | TTAA | 2 cut(s) | 5, 225 |
| TseI | GCWGC | 1 cut(s) | 127 |
| XceI | RCATGY | 2 cut(s) | 29, 107 |