Rmu_ssc0000410.1_g000019

CRS2-associated factor 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000410.1
N/A
Physical Location & Seq
Forward (+)
80567 .. 81227
661 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atggaaggaaaaggagttgaaacgtttgctattgtggcctcccccagctcttcaaccgtcgatctatatccggatggatcaagatctggcaatccctactattacgaccctccgttttctccagcttccaaatccccaaaccccaaaaacaaaaagacccagaatgctgatccgaacaaagacctgaccacccagcctctcaaattggaccttcccttcgacttcagctactcctactgggagaccccgtcggcggaacctatttctttcctggagtcgcccaagttctctctttttgggccgggatggcttgataggaaatggacagggaccgttacccccggcccaacaagaagtaaacttgaaccagttggcccaggaaaggaaacgggttatcggagacccgctttcggaggaggaagtggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

142

Amino Acids

15.43

Weight (kDa)

7.85

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 2 cut(s) 254, 405
AclI AACGTT 1 cut(s) 23
AclWI GGATC 2 cut(s) 85, 164
AcuI CTGAAG 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 253, 382, 410
AgsI TTSAA 3 cut(s) 20, 54, 365
AjnI CCWGG 2 cut(s) 270, 376
AluBI AGCT 3 cut(s) 48, 125, 228
AluI AGCT 3 cut(s) 48, 125, 228
Alw26I GTCTC 2 cut(s) 236, 394
AlwI GGATC 2 cut(s) 85, 164
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 4 cut(s) 36, 299, 343, 373
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspS9I GGNCC 5 cut(s) 208, 299, 330, 344, 374
AsuC2I CCSGG 2 cut(s) 303, 342
AvaII GGWCC 2 cut(s) 208, 330
BccI CCATC 2 cut(s) 68, 300
BciT130I CCWGG 2 cut(s) 272, 378
BcnI CCSGG 2 cut(s) 303, 342
BcoDI GTCTC 2 cut(s) 236, 394
BglI GCCNNNNNGGC 1 cut(s) 307
BglII AGATCT 1 cut(s) 83
Bme1390I CCNGG 4 cut(s) 272, 303, 342, 378
Bme18I GGWCC 2 cut(s) 208, 330
BmgT120I GGNCC 5 cut(s) 208, 299, 330, 344, 374
BmiI GGNNCC 2 cut(s) 258, 331
BmrFI CCNGG 4 cut(s) 272, 303, 342, 378
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpmI CTGGAG 2 cut(s) 105, 293
BpuMI CCSGG 2 cut(s) 303, 342
BsaBI GATNNNNATC 2 cut(s) 66, 82
BsaI GGTCTC 2 cut(s) 236, 394
BsaJI CCNNGG 2 cut(s) 340, 376
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 382, 410
Bse1I ACTGG 2 cut(s) 242, 368
Bse8I GATNNNNATC 2 cut(s) 66, 82
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 2 cut(s) 272, 378
BseDI CCNNGG 2 cut(s) 340, 376
BseGI GGATG 2 cut(s) 79, 311
BseJI GATNNNNATC 2 cut(s) 66, 82
BseLI CCNNNNNNNGG 3 cut(s) 253, 382, 410
BseNI ACTGG 2 cut(s) 242, 368
BseRI GAGGAG 1 cut(s) 429
BseYI CCCAGC 2 cut(s) 44, 192
BshFI GGCC 4 cut(s) 38, 301, 345, 375
BsiSI CCGG 3 cut(s) 71, 302, 342
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 3 cut(s) 253, 382, 410
BsmAI GTCTC 2 cut(s) 236, 394
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 4 cut(s) 38, 301, 345, 375
Bso31I GGTCTC 2 cut(s) 236, 394
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 4 cut(s) 61, 77, 83, 169
BspACI CCGC 2 cut(s) 254, 405
BspANI GGCC 4 cut(s) 38, 301, 345, 375
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 258, 331
BspPI GGATC 2 cut(s) 85, 164
BspQI GCTCTTC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 236, 394
BsrI ACTGG 2 cut(s) 242, 368
BssECI CCNNGG 2 cut(s) 340, 376
BssMI GATC 4 cut(s) 61, 77, 83, 169
Bst2UI CCWGG 2 cut(s) 272, 378
Bst4CI ACNGT 2 cut(s) 58, 334
Bst6I CTCTTC 1 cut(s) 55
BstF5I GGATG 2 cut(s) 79, 311
BstKTI GATC 4 cut(s) 64, 80, 86, 172
BstMAI GTCTC 2 cut(s) 236, 394
BstMBI GATC 4 cut(s) 61, 77, 83, 169
BstMWI GCNNNNNNNGC 2 cut(s) 35, 307
BstNI CCWGG 2 cut(s) 272, 378
BstSCI CCNGG 4 cut(s) 270, 301, 340, 376
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 4 cut(s) 38, 301, 345, 375
BtsCI GGATG 2 cut(s) 79, 311
Cfr13I GGNCC 5 cut(s) 208, 299, 330, 344, 374
DpnI GATC 4 cut(s) 63, 79, 85, 171
DpnII GATC 4 cut(s) 61, 77, 83, 169
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 269
Eco31I GGTCTC 2 cut(s) 236, 394
Eco47I GGWCC 2 cut(s) 208, 330
Eco57I CTGAAG 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 270, 376
FaiI YATR 1 cut(s) 67
FaqI GGGAC 1 cut(s) 343
FauI CCCGC 1 cut(s) 412
FokI GGATG 2 cut(s) 86, 318
GsaI CCCAGC 2 cut(s) 48, 196
GsuI CTGGAG 2 cut(s) 105, 293
HaeIII GGCC 4 cut(s) 38, 301, 345, 375
HapII CCGG 3 cut(s) 71, 302, 342
HinfI GANTC 1 cut(s) 275
HpaII CCGG 3 cut(s) 71, 302, 342
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 3 cut(s) 174, 399, 413
Hpy188III TCNNGA 2 cut(s) 71, 81
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 2 cut(s) 62, 253
HpyAV CCTTC 2 cut(s) 221, 226
HpyCH4III ACNGT 2 cut(s) 58, 334
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 307
HpySE526I ACGT 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 61, 77, 83, 169
LguI GCTCTTC 1 cut(s) 55
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 334
MalI GATC 4 cut(s) 63, 79, 85, 171
MboI GATC 4 cut(s) 61, 77, 83, 169
MboII GAAGA 1 cut(s) 42
MflI RGATCY 1 cut(s) 83
MluCI AATT 1 cut(s) 203
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 5 cut(s) 49, 120, 207, 407, 410
MroI TCCGGA 1 cut(s) 70
MspI CCGG 3 cut(s) 71, 302, 342
MspR9I CCNGG 4 cut(s) 272, 303, 342, 378
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 2 cut(s) 272, 378
MwoI GCNNNNNNNGC 2 cut(s) 35, 307
NciI CCSGG 2 cut(s) 303, 342
NdeII GATC 4 cut(s) 61, 77, 83, 169
NlaIV GGNNCC 2 cut(s) 258, 331
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 270
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp1406I AACGTT 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 270, 376
PspFI CCCAGC 2 cut(s) 44, 192
PspGI CCWGG 2 cut(s) 270, 376
PspN4I GGNNCC 2 cut(s) 258, 331
PspPI GGNCC 5 cut(s) 208, 299, 330, 344, 374
PsuI RGATCY 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 61, 77, 83, 169
Sau96I GGNCC 5 cut(s) 208, 299, 330, 344, 374
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 4 cut(s) 272, 303, 342, 378
SetI ASST 7 cut(s) 26, 50, 127, 186, 213, 230, 262
SinI GGWCC 2 cut(s) 208, 330
Sse9I AATT 1 cut(s) 203
SsiI CCGC 2 cut(s) 254, 405
StyD4I CCNGG 4 cut(s) 270, 301, 340, 376
TaaI ACNGT 2 cut(s) 58, 334
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 60, 219
TasI AATT 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 102
Tth111I GACNNNGTC 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 208, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.