Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

267550 .. 268694

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtccagtctgacgcccaggccgcctaggcagccgcccaaatcctatccgcctaaggactccaattttccaccactcgcctcggtctgctgccgcccagtgcctaggcggcctgggcagccgagttttagaacattggaggaggaggaggaggagatgtacgtgatggcggtgcgaccgacagatctgaatcggaacacgaaatggtttacgtaccccggtgtttggactacctacattctcgatcatcgtcttcttttcatggctcatcgttctttgcctcttctctttctctcccggcatggcctggaccctcgctcattttctcatgatgatgaatttgtatgtatgtcgggagagtatttatggatcttcttctgccgtctgcttgttcttcgtgctcgctgcttctacctagctcccgggtgtcgctttacagagagagagcctcgaattacagagagccatggcttccgagggagctacgaaatcgagctcagcggccaattcatacatagggatcttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

176

Amino Acids

20.76

Weight (kDa)

8.25

Isoelectric Point (pI)

68.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	23, 35, 50, 94, 109, 170, 501
AclWI	GGATC	2 cut(s)	377, 528
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	161, 215
AfiI	CCNNNNNNNGG	1 cut(s)	225
AjnI	CCWGG	3 cut(s)	17, 112, 306
AluBI	AGCT	3 cut(s)	419, 483, 496
AluI	AGCT	3 cut(s)	419, 483, 496
Alw21I	GWGCWC	2 cut(s)	403, 498
AlwI	GGATC	2 cut(s)	377, 528
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	4 cut(s)	20, 110, 304, 502
ApeKI	GCWGC	4 cut(s)	31, 90, 118, 405
ApoI	RAATTY	1 cut(s)	338
AspA2I	CCTAGG	2 cut(s)	26, 104
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	4 cut(s)	219, 298, 423, 424
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	310
AvrII	CCTAGG	2 cut(s)	26, 104
AxyI	CCTNAGG	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	403, 498
BbvI	GCAGC	4 cut(s)	43, 77, 130, 392
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	3 cut(s)	19, 114, 308
BcnI	CCSGG	4 cut(s)	219, 298, 423, 424
BfaI	CTAG	3 cut(s)	27, 105, 416
BglI	GCCNNNNNGGC	2 cut(s)	28, 109
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	9 cut(s)	23, 32, 35, 91, 94, 110, 119, 406, 502
BlnI	CCTAGG	2 cut(s)	26, 104
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	9 cut(s)	24, 33, 36, 92, 95, 111, 120, 407, 503
Bme1390I	CCNGG	7 cut(s)	19, 114, 219, 298, 308, 423, 424
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	7 cut(s)	19, 114, 219, 298, 308, 423, 424
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuMI	CCSGG	4 cut(s)	219, 298, 423, 424
BsaAI	YACGTR	2 cut(s)	163, 213
BsaBI	GATNNNNATC	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	9 cut(s)	17, 26, 81, 104, 113, 217, 422, 466, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	6, 98
Bse21I	CCTNAGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	3 cut(s)	19, 114, 308
BseDI	CCNNGG	9 cut(s)	17, 26, 81, 104, 113, 217, 422, 466, 475
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	511
BseNI	ACTGG	2 cut(s)	6, 98
BseRI	GAGGAG	5 cut(s)	155, 158, 161, 164, 167
BseXI	GCAGC	4 cut(s)	43, 77, 130, 392
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	22, 112, 306, 504
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	403, 498
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	3 cut(s)	219, 298, 423
BslI	CCNNNNNNNGG	1 cut(s)	225
BsnI	GGCC	4 cut(s)	22, 112, 306, 504
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	403, 498
Bsp143I	GATC	4 cut(s)	184, 244, 369, 520
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	7 cut(s)	23, 35, 50, 94, 109, 170, 501
BspANI	GGCC	4 cut(s)	22, 112, 306, 504
BspCNI	CTCAG	1 cut(s)	510
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	377, 528
BsrI	ACTGG	2 cut(s)	6, 98
BssECI	CCNNGG	9 cut(s)	17, 26, 81, 104, 113, 217, 422, 466, 475
BssMI	GATC	4 cut(s)	184, 244, 369, 520
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	3 cut(s)	26, 104, 466
Bst2UI	CCWGG	3 cut(s)	19, 114, 308
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	2 cut(s)	163, 213
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	54, 497
BstDSI	CCRYGG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	187, 247, 372, 523
BstMBI	GATC	4 cut(s)	184, 244, 369, 520
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 28, 31, 109, 115, 118
BstNI	CCWGG	3 cut(s)	19, 114, 308
BstSCI	CCNGG	7 cut(s)	17, 112, 217, 296, 306, 421, 422
BstSNI	TACGTA	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	43, 77, 130, 392
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	3 cut(s)	184, 369, 520
BstYI	RGATCY	3 cut(s)	184, 369, 520
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	22, 112, 306, 504
BtgI	CCRYGG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	310
Cfr9I	CCCGGG	1 cut(s)	422
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	160, 214
CviAII	CATG	4 cut(s)	262, 302, 329, 467
CviQI	GTAC	2 cut(s)	160, 214
DdeI	CTNAG	2 cut(s)	54, 497
DpnI	GATC	4 cut(s)	186, 246, 371, 522
DpnII	GATC	4 cut(s)	184, 244, 369, 520
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	496
Eco105I	TACGTA	1 cut(s)	213
Eco130I	CCWWGG	3 cut(s)	26, 104, 466
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	17, 112, 306
EcoT14I	CCWWGG	3 cut(s)	26, 104, 466
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	3 cut(s)	26, 104, 466
FaeI	CATG	4 cut(s)	265, 305, 332, 470
FaiI	YATR	9 cut(s)	263, 303, 330, 346, 350, 367, 468, 512, 516
FatI	CATG	4 cut(s)	261, 301, 328, 466
Fnu4HI	GCNGC	9 cut(s)	23, 32, 35, 91, 94, 110, 119, 406, 502
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	9 cut(s)	23, 32, 35, 91, 94, 110, 119, 406, 502
FspBI	CTAG	3 cut(s)	27, 105, 416
GluI	GCNGC	9 cut(s)	23, 32, 35, 91, 94, 110, 119, 406, 502
HaeIII	GGCC	4 cut(s)	22, 112, 306, 504
HapII	CCGG	3 cut(s)	219, 298, 423
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	265, 305, 332, 470
HinfI	GANTC	2 cut(s)	59, 190
HpaII	CCGG	3 cut(s)	219, 298, 423
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	4 cut(s)	12, 189, 195, 476
Hpy188III	TCNNGA	4 cut(s)	242, 329, 354, 524
Hpy8I	GTNNAC	1 cut(s)	210
HpyCH4IV	ACGT	2 cut(s)	162, 212
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 28, 31, 109, 115, 118
HpyF3I	CTNAG	2 cut(s)	54, 497
HpySE526I	ACGT	2 cut(s)	162, 212
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	265, 305, 332, 470
Kzo9I	GATC	4 cut(s)	184, 244, 369, 520
LmnI	GCTCC	2 cut(s)	424, 480
Lsp1109I	GCAGC	4 cut(s)	43, 77, 130, 392
MaeI	CTAG	3 cut(s)	27, 105, 416
MaeII	ACGT	2 cut(s)	162, 212
MalI	GATC	4 cut(s)	186, 246, 371, 522
MboI	GATC	4 cut(s)	184, 244, 369, 520
MboII	GAAGA	5 cut(s)	245, 275, 364, 367, 386
MflI	RGATCY	3 cut(s)	184, 369, 520
MhlI	GDGCHC	2 cut(s)	403, 498
MluCI	AATT	4 cut(s)	64, 338, 453, 506
MlyI	GAGTC	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	501
MspI	CCGG	3 cut(s)	219, 298, 423
MspR9I	CCNGG	7 cut(s)	19, 114, 219, 298, 308, 423, 424
MvaI	CCWGG	3 cut(s)	19, 114, 308
MwoI	GCNNNNNNNGC	6 cut(s)	22, 28, 31, 109, 115, 118
NciI	CCSGG	4 cut(s)	219, 298, 423, 424
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	4 cut(s)	184, 244, 369, 520
NlaIII	CATG	4 cut(s)	265, 305, 332, 470
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	147
PagI	TCATGA	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	9 cut(s)	24, 33, 36, 92, 95, 111, 120, 407, 503
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	2 cut(s)	163, 213
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	17, 112, 306
PspGI	CCWGG	3 cut(s)	17, 112, 306
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	3 cut(s)	184, 369, 520
RsaI	GTAC	2 cut(s)	161, 215
RsaNI	GTAC	2 cut(s)	160, 214
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	498
SatI	GCNGC	9 cut(s)	23, 32, 35, 91, 94, 110, 119, 406, 502
Sau3AI	GATC	4 cut(s)	184, 244, 369, 520
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	7 cut(s)	19, 114, 219, 298, 308, 423, 424
SduI	GDGCHC	2 cut(s)	403, 498
SetI	ASST	7 cut(s)	165, 215, 236, 417, 421, 485, 498
SinI	GGWCC	1 cut(s)	310
SmaI	CCCGGG	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	333
SnaBI	TACGTA	1 cut(s)	213
Sse9I	AATT	4 cut(s)	64, 338, 453, 506
SsiI	CCGC	7 cut(s)	23, 35, 50, 94, 109, 170, 501
SspMI	CTAG	3 cut(s)	27, 105, 416
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	7 cut(s)	17, 112, 217, 296, 306, 421, 422
StyI	CCWWGG	3 cut(s)	26, 104, 466
TaiI	ACGT	2 cut(s)	165, 215
TaqI	TCGA	3 cut(s)	243, 451, 492
TaqII	GACCGA	2 cut(s)	73, 193
TasI	AATT	4 cut(s)	64, 338, 453, 506
TauI	GCSGC	5 cut(s)	25, 37, 96, 112, 504
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	4 cut(s)	31, 90, 118, 405
TspDTI	ATGAA	3 cut(s)	250, 351, 499
TspMI	CCCGGG	1 cut(s)	422
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	338
XmaI	CCCGGG	1 cut(s)	422
XmaJI	CCTAGG	2 cut(s)	26, 104
XspI	CTAG	3 cut(s)	27, 105, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.