Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

226297 .. 226721

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atggccaccgtcttcggagccacttccgccgccatctccgtctcctccaactcccgcaaactccacctcccttcccgtagatccctcccagggaggaaagccggctttcttgtggttagatctgatgccggagctaaccccaatgctgggcctcgccgcgccggtcagttgatcaccaatgccgttgccacaaaagctgatgctgctgcggcttccgcgccgtcgaaacctgggtatgtttttatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

82

Amino Acids

8.3

Weight (kDa)

11.89

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	159, 218
AciI	CCGC	6 cut(s)	27, 30, 55, 157, 209, 216
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	90, 146, 147
AjnI	CCWGG	2 cut(s)	88, 229
AluBI	AGCT	2 cut(s)	134, 197
AluI	AGCT	2 cut(s)	134, 197
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	3, 149
ApeKI	GCWGC	2 cut(s)	203, 206
AspLEI	GCGC	2 cut(s)	161, 220
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	190, 193
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	167, 205
BciT130I	CCWGG	2 cut(s)	90, 231
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	5 cut(s)	30, 157, 204, 207, 210
BlsI	GCNGC	5 cut(s)	31, 158, 205, 208, 211
Bme1390I	CCNGG	2 cut(s)	90, 231
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	90, 231
BmsI	GCATC	2 cut(s)	115, 190
BpiI	GAAGAC	1 cut(s)	4
BsaJI	CCNNGG	3 cut(s)	88, 89, 230
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 146, 147
Bse118I	RCCGGY	2 cut(s)	101, 161
BseBI	CCWGG	2 cut(s)	90, 231
BseDI	CCNNGG	3 cut(s)	88, 89, 230
BseLI	CCNNNNNNNGG	3 cut(s)	90, 146, 147
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	190, 193
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	159, 218
BshFI	GGCC	2 cut(s)	5, 151
BsiSI	CCGG	3 cut(s)	102, 129, 162
BslI	CCNNNNNNNGG	3 cut(s)	90, 146, 147
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	5, 151
Bsp143I	GATC	3 cut(s)	80, 119, 171
BspACI	CCGC	6 cut(s)	27, 30, 55, 157, 209, 216
BspANI	GGCC	2 cut(s)	5, 151
BspFNI	CGCG	2 cut(s)	159, 218
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	101, 161
BssAI	RCCGGY	2 cut(s)	101, 161
BssECI	CCNNGG	3 cut(s)	88, 89, 230
BssMI	GATC	3 cut(s)	80, 119, 171
Bst2UI	CCWGG	2 cut(s)	90, 231
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	103
BstFNI	CGCG	2 cut(s)	159, 218
BstHHI	GCGC	2 cut(s)	161, 220
BstKTI	GATC	3 cut(s)	83, 122, 174
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	80, 119, 171
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 194, 203, 209, 215
BstNI	CCWGG	2 cut(s)	90, 231
BstSCI	CCNGG	2 cut(s)	88, 229
BstUI	CGCG	2 cut(s)	159, 218
BstV1I	GCAGC	2 cut(s)	190, 193
BstV2I	GAAGAC	1 cut(s)	4
BstX2I	RGATCY	2 cut(s)	80, 119
BstYI	RGATCY	2 cut(s)	80, 119
BsuRI	GGCC	2 cut(s)	5, 151
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	161, 220
Cfr10I	RCCGGY	2 cut(s)	101, 161
Cfr13I	GGNCC	1 cut(s)	149
CviJI	RGCY	8 cut(s)	5, 20, 101, 105, 134, 151, 197, 212
CviKI_1	RGCY	8 cut(s)	5, 20, 101, 105, 134, 151, 197, 212
DpnI	GATC	3 cut(s)	82, 121, 173
DpnII	GATC	3 cut(s)	80, 119, 171
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	88, 229
Esp3I	CGTCTC	1 cut(s)	46
FaiI	YATR	2 cut(s)	237, 245
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	30, 157, 204, 207, 210
Fsp4HI	GCNGC	5 cut(s)	30, 157, 204, 207, 210
GlaI	GCGC	2 cut(s)	160, 219
GluI	GCNGC	5 cut(s)	30, 157, 204, 207, 210
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	5, 151
HapII	CCGG	3 cut(s)	102, 129, 162
HhaI	GCGC	2 cut(s)	161, 220
Hin6I	GCGC	2 cut(s)	159, 218
HinP1I	GCGC	2 cut(s)	159, 218
HpaII	CCGG	3 cut(s)	102, 129, 162
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	17, 124
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 194, 203, 209, 215
HspAI	GCGC	2 cut(s)	159, 218
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	80, 119, 171
LmnI	GCTCC	2 cut(s)	17, 131
LpnPI	CCDG	8 cut(s)	75, 102, 115, 132, 142, 175, 216, 243
Lsp1109I	GCAGC	2 cut(s)	190, 193
LweI	GCATC	2 cut(s)	115, 190
MalI	GATC	3 cut(s)	82, 121, 173
MboI	GATC	3 cut(s)	80, 119, 171
MboII	GAAGA	1 cut(s)	4
MflI	RGATCY	2 cut(s)	80, 119
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	55, 77, 87, 95, 162
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	102, 129, 162
MspR9I	CCNGG	2 cut(s)	90, 231
MvaI	CCWGG	2 cut(s)	90, 231
MvnI	CGCG	2 cut(s)	159, 218
MwoI	GCNNNNNNNGC	5 cut(s)	26, 194, 203, 209, 215
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	3 cut(s)	80, 119, 171
NgoMIV	GCCGGC	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	19
PasI	CCCWGGG	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	31, 158, 205, 208, 211
Psp6I	CCWGG	2 cut(s)	88, 229
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	88, 229
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	80, 119
SatI	GCNGC	5 cut(s)	30, 157, 204, 207, 210
Sau3AI	GATC	3 cut(s)	80, 119, 171
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	90, 231
SetI	ASST	4 cut(s)	69, 136, 199, 232
SfaNI	GCATC	2 cut(s)	115, 190
SsiI	CCGC	6 cut(s)	27, 30, 55, 157, 209, 216
StyD4I	CCNGG	2 cut(s)	88, 229
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	224
TauI	GCSGC	3 cut(s)	32, 159, 212
TseI	GCWGC	2 cut(s)	203, 206
TspGWI	ACGGA	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.