Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000428.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1248

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

atgcttggcgcccaagggcgggtggtgggcctgacggcggaacaccctcaaaactccatttccaattcaatctctcatcagcacaatcttcatttccgatcagtttctatttgtgtgtgtgtgtggaggttttttttggatcaatttgagttgaggagcaaactgttgggggataggagtgagggtttggtggtttcgcagaatatggcttctcaggtccgaagtgagcgtagggagaataataataggtccaggaatcctgctcagcctcgctgggtgcccagaggatccaaccctacccccgccgccgctgccgtgaacccgccgagctttggttcgaacctacccgatgggaatgcagggatgcccaacaacagctctgaagcaggagagggccggcagcatagaggaggacatgctggaaatggaaatggagggcagcagaaccacatttctgcaccagcagagagtcggcagcttagaggaggatatagtggaaatggtgggcagctcaattatgtgttggcggcaccgtcagagagtcggcagcatagagggggacataatggaaatggaggccagtccaactacagcttcacagcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

K_trans R3H zf-NF-X1

Protein Analysis

201

Amino Acids

21.49

Weight (kDa)

10.65

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	8, 277, 529
AciI	CCGC	7 cut(s)	19, 38, 303, 306, 309, 323, 527
AclWI	GGATC	3 cut(s)	147, 282, 295
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	4 cut(s)	18, 19, 37, 332
AgsI	TTSAA	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	1 cut(s)	578
AluBI	AGCT	5 cut(s)	330, 378, 478, 511, 594
AluI	AGCT	5 cut(s)	330, 378, 478, 511, 594
AlwI	GGATC	3 cut(s)	147, 282, 295
AoxI	GGCC	3 cut(s)	28, 394, 577
ApeKI	GCWGC	6 cut(s)	311, 400, 439, 475, 508, 547
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	4 cut(s)	28, 217, 249, 394
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	217, 249
BaeGI	GKGCMC	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	287
BanI	GGYRCC	3 cut(s)	8, 277, 529
BbvI	GCAGC	6 cut(s)	298, 412, 451, 487, 520, 559
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	2 cut(s)	51, 299
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	589
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	9 cut(s)	306, 309, 312, 401, 440, 476, 509, 528, 548
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	9 cut(s)	307, 310, 313, 402, 441, 477, 510, 529, 549
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	217, 249
BmgT120I	GGNCC	4 cut(s)	28, 217, 249, 394
BmiI	GGNNCC	4 cut(s)	10, 279, 289, 531
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 19, 37, 332
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	18, 19, 37, 332
BseMII	CTCAG	2 cut(s)	227, 278
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	3 cut(s)	169, 423, 498
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	6 cut(s)	298, 412, 451, 487, 520, 559
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	30, 396, 579
BshNI	GGYRCC	3 cut(s)	8, 277, 529
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	4 cut(s)	18, 19, 37, 332
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	30, 396, 579
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	98, 139, 287
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	7 cut(s)	19, 38, 303, 306, 309, 323, 527
BspANI	GGCC	3 cut(s)	30, 396, 579
BspCNI	CTCAG	2 cut(s)	226, 277
BspLI	GGNNCC	4 cut(s)	10, 279, 289, 531
BspPI	GGATC	3 cut(s)	147, 282, 295
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	3 cut(s)	8, 277, 529
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	98, 139, 287
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	165, 534
BstACI	GRCGYC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	3 cut(s)	213, 264, 479
BstF5I	GGATG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	101, 142, 290
BstMBI	GATC	3 cut(s)	98, 139, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	1 cut(s)	589
BstSLI	GKGCMC	1 cut(s)	282
BstV1I	GCAGC	6 cut(s)	298, 412, 451, 487, 520, 559
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	30, 396, 579
BtsCI	GGATG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	398
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	4 cut(s)	28, 217, 249, 394
CviAII	CATG	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	213, 264, 479
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	3 cut(s)	100, 141, 289
DpnII	GATC	3 cut(s)	98, 139, 287
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	217, 249
Eco57I	CTGAAG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	419
FaiI	YATR	7 cut(s)	206, 405, 417, 492, 519, 552, 564
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	1 cut(s)	415
FauI	CCCGC	3 cut(s)	12, 310, 330
Fnu4HI	GCNGC	9 cut(s)	306, 309, 312, 401, 440, 476, 509, 528, 548
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	9 cut(s)	306, 309, 312, 401, 440, 476, 509, 528, 548
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	9 cut(s)	306, 309, 312, 401, 440, 476, 509, 528, 548
GsaI	CCCAGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	30, 396, 579
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	256, 469, 541
HpaII	CCGG	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	98, 221, 382, 538
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	165, 534
HpyCH4V	TGCA	2 cut(s)	359, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	213, 264, 479
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	98, 139, 287
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	6 cut(s)	298, 412, 451, 487, 520, 559
LweI	GCATC	1 cut(s)	354
MalI	GATC	3 cut(s)	100, 141, 289
MboI	GATC	3 cut(s)	98, 139, 287
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	3 cut(s)	64, 143, 514
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	478, 550
MmeI	TCCRAC	1 cut(s)	315
MroNI	GCCGGC	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	311
NaeI	GCCGGC	1 cut(s)	398
NarI	GGCGCC	1 cut(s)	9
NdeII	GATC	3 cut(s)	98, 139, 287
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	4 cut(s)	10, 279, 289, 531
NmeAIII	GCCGAG	1 cut(s)	351
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	338
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	9 cut(s)	307, 310, 313, 402, 441, 477, 510, 529, 549
PleI	GAGTC	2 cut(s)	477, 549
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	2 cut(s)	477, 549
Psp6I	CCWGG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	10, 279, 289, 531
PspPI	GGNCC	4 cut(s)	28, 217, 249, 394
PsuI	RGATCY	1 cut(s)	287
SatI	GCNGC	9 cut(s)	306, 309, 312, 401, 440, 476, 509, 528, 548
Sau3AI	GATC	3 cut(s)	98, 139, 287
Sau96I	GGNCC	4 cut(s)	28, 217, 249, 394
SchI	GAGTC	2 cut(s)	478, 550
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	9 cut(s)	131, 219, 251, 332, 345, 380, 480, 513, 596
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	589
SfoI	GGCGCC	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	2 cut(s)	217, 249
Sse9I	AATT	3 cut(s)	64, 143, 514
SsiI	CCGC	7 cut(s)	19, 38, 303, 306, 309, 323, 527
SspDI	GGCGCC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	165, 534
TaqI	TCGA	1 cut(s)	338
TasI	AATT	3 cut(s)	64, 143, 514
TauI	GCSGC	3 cut(s)	308, 311, 530
TfiI	GAWTC	1 cut(s)	256
TseI	GCWGC	6 cut(s)	311, 400, 439, 475, 508, 547
TspDTI	ATGAA	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	217, 249
XceI	RCATGY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.