Rmu_ssc0000434.1_g000013

invertase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000434.1
N/A
Physical Location & Seq
Forward (+)
62050 .. 62352
303 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
atgacaactcccatattcacctccacattcctccctctcttgagtctcttcctcctcttctcatcaaccttcactcccataactgccaacaatgtcatctctgaaatctgcaagaaatgtgctcaagaagagtacaccagtatgagctacaagttctgcgtgacttctctccaagccgacccaaacagccaaggcgccgatctccggcaacttggccttatatccatgaagctagctagtcaagaacaacgtgaccaacacaaggcgcttcatcaagaatcttctcaagaacgaggagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

100

Amino Acids

11.15

Weight (kDa)

6.05

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 204, 262
AluBI AGCT 4 cut(s) 147, 232, 236, 299
AluI AGCT 4 cut(s) 147, 232, 236, 299
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 50
AoxI GGCC 1 cut(s) 214
AspLEI GCGC 2 cut(s) 197, 268
AsuHPI GGTGA 1 cut(s) 10
AsuNHI GCTAGC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 2 cut(s) 233, 237
BfoI RGCGCY 2 cut(s) 198, 269
BmiI GGNNCC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 236
BpuEI CTTGAG 3 cut(s) 61, 108, 270
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 262
Bse1I ACTGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 204, 262
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 204, 262
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 190
Bst6I CTCTTC 3 cut(s) 53, 62, 123
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 234
BstH2I RGCGCY 2 cut(s) 198, 269
BstHHI GCGC 2 cut(s) 197, 268
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 2 cut(s) 197, 268
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 226
CviJI RGCY 7 cut(s) 147, 176, 189, 216, 232, 236, 299
CviKI_1 RGCY 7 cut(s) 147, 176, 189, 216, 232, 236, 299
CviQI GTAC 1 cut(s) 133
DinI GGCGCC 1 cut(s) 196
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 3 cut(s) 53, 62, 123
EarI CTCTTC 3 cut(s) 53, 62, 123
Eco130I CCWWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 190
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 14, 80, 143, 221, 227
FatI CATG 1 cut(s) 225
FspBI CTAG 2 cut(s) 233, 237
GlaI GCGC 2 cut(s) 196, 267
HaeII RGCGCY 2 cut(s) 198, 269
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 205
HhaI GCGC 2 cut(s) 197, 268
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 2 cut(s) 195, 266
HinP1I GCGC 2 cut(s) 195, 266
HinfI GANTC 2 cut(s) 43, 278
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 5 cut(s) 40, 125, 242, 275, 287
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 250
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 2 cut(s) 195, 266
KasI GGCGCC 1 cut(s) 194
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 2 cut(s) 151, 218
MaeI CTAG 2 cut(s) 233, 237
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 160, 251
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 4 cut(s) 40, 49, 140, 273
MhlI GDGCHC 1 cut(s) 124
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 6 cut(s) 31, 41, 45, 62, 65, 287
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 205
NarI GGCGCC 1 cut(s) 195
NdeII GATC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 160, 251
PfeI GAWTC 1 cut(s) 278
PleI GAGTC 1 cut(s) 51
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 140
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 124
SetI ASST 7 cut(s) 23, 71, 149, 234, 238, 253, 301
SfoI GGCGCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 3 cut(s) 40, 123, 285
SmoI CTYRAG 3 cut(s) 40, 123, 285
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 2 cut(s) 233, 237
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 253
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 278
TseFI GTSAC 2 cut(s) 160, 251
Tsp45I GTSAC 2 cut(s) 160, 251
TspDTI ATGAA 2 cut(s) 242, 260
XspI CTAG 2 cut(s) 233, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.