Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000434.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

71915 .. 73930

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgaagatgaagaagaagaaggagaaggagaagcagaagaagacgaagaatcaacccatgttcataccctcaataattggtcttagaccagtcatggcagctccaccacatccatgcgcacgacaccaccacccctgccgtctccgtcaaacagtacccatggctcacgacttccatcaaaccgtacccatggctcaccacgaatcccagcgactcaatttgagacagaactgccacgggcaacggagcttcggaggtcatgttttggtgactcatgatgtatatttccaaaaagatttgggcttatatagctgggataatgtggagattgtaatggctctagaacaagagctcaagcttgagattcctgacaaggaagctgataagattgattctgcaaatctggccattgagtacatctataaccatccaatggcttcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

147

Amino Acids

17.08

Weight (kDa)

9.15

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	405
AfaI	GTAC	3 cut(s)	156, 186, 416
AfiI	CCNNNNNNNGG	1 cut(s)	433
AluBI	AGCT	6 cut(s)	101, 249, 312, 352, 358, 380
AluI	AGCT	6 cut(s)	101, 249, 312, 352, 358, 380
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	146, 217
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	188, 280
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	183, 435
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	146, 217
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	338, 380
BsaJI	CCNNGG	3 cut(s)	159, 189, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	159, 189, 235
BseGI	GGATG	2 cut(s)	109, 427
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	207, 312
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	146, 217
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp19I	CCATGG	2 cut(s)	159, 189
BspANI	GGCC	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	159, 189, 235
BssT1I	CCWWGG	2 cut(s)	159, 189
Bst4CI	ACNGT	2 cut(s)	154, 184
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	3 cut(s)	159, 189, 235
BstF5I	GGATG	2 cut(s)	109, 427
BstHHI	GCGC	1 cut(s)	119
BstMAI	GTCTC	2 cut(s)	146, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 404
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	3 cut(s)	159, 189, 235
BtsCI	GGATG	2 cut(s)	109, 427
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	155, 185, 415
CviAII	CATG	7 cut(s)	58, 94, 114, 160, 190, 260, 275
CviQI	GTAC	3 cut(s)	155, 185, 415
DdeI	CTNAG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	159, 189
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	159, 189
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	159, 189
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	7 cut(s)	61, 97, 117, 163, 193, 263, 278
FatI	CATG	7 cut(s)	57, 93, 113, 159, 189, 259, 274
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	2 cut(s)	96, 414
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	99
FspAI	RTGCGCAY	1 cut(s)	118
FspBI	CTAG	1 cut(s)	341
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	211, 316
HaeIII	GGCC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	7 cut(s)	61, 97, 117, 163, 193, 263, 278
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	6 cut(s)	49, 203, 213, 271, 364, 392
HphI	GGTGA	2 cut(s)	188, 280
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	4 cut(s)	167, 275, 341, 368
HpyAV	CCTTC	2 cut(s)	13, 19
HpyCH4III	ACNGT	2 cut(s)	154, 184
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 404
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	7 cut(s)	61, 97, 117, 163, 193, 263, 278
HspAI	GCGC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	106, 246
LpnPI	CCDG	6 cut(s)	102, 148, 221, 298, 381, 389
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	16, 22, 25, 28, 49, 52, 58
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	2 cut(s)	75, 217
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	207, 265
MnlI	CCTC	2 cut(s)	79, 248
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	112
Msp20I	TGGCCA	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	309, 404
NcoI	CCATGG	2 cut(s)	159, 189
NlaIII	CATG	7 cut(s)	61, 97, 117, 163, 193, 263, 278
NmuCI	GTSAC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	49, 203, 364, 392
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	2 cut(s)	207, 265
PpsI	GAGTC	2 cut(s)	207, 265
Psp124BI	GAGCTC	1 cut(s)	354
PspFI	CCCAGC	2 cut(s)	207, 312
RsaI	GTAC	3 cut(s)	156, 186, 416
RsaNI	GTAC	3 cut(s)	155, 185, 415
RseI	CAYNNNNRTG	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	354
SatI	GCNGC	1 cut(s)	99
SchI	GAGTC	2 cut(s)	207, 265
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	7 cut(s)	103, 251, 259, 314, 354, 360, 382
SmiMI	CAYNNNNRTG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	353, 359
SmoI	CTYRAG	2 cut(s)	353, 359
Sse9I	AATT	2 cut(s)	75, 217
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	354
StyI	CCWWGG	2 cut(s)	159, 189
TaaI	ACNGT	2 cut(s)	154, 184
TasI	AATT	2 cut(s)	75, 217
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	4 cut(s)	49, 203, 364, 392
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	17, 23, 52
TspGWI	ACGGA	2 cut(s)	134, 259
Van91I	CCANNNNNTGG	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	340
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.