Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000438.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14782 .. 15156

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggaacagatcgagaacaagaacgtcttttattggttccagaatcaaagggctcgggagaagctgaaaaagaggaatctcacttcggatgttcaagtgcccaagcaaagatcagggcttgttggtggatccattaatctcaattttgggtcaactagttctgctgatgttggtggatccatcatggaacaacgaggagaagatcaccaggaggttaaaaccgttccactgtttcccatgcacagtgaggacatctttggcaacatgaagactacttccgacagaggtggtggtcacggtggtggctcttacatttcccttgagctcagcctttcctgcgagggcaaagctggaaaacgtttttggagccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

124

Amino Acids

13.78

Weight (kDa)

9.17

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	370
AclI	AACGTT	1 cut(s)	358
AclWI	GGATC	4 cut(s)	123, 136, 171, 184
AgsI	TTSAA	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	1 cut(s)	346
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	3 cut(s)	64, 325, 350
AluI	AGCT	3 cut(s)	64, 325, 350
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	4 cut(s)	123, 136, 171, 184
Ama87I	CYCGRG	1 cut(s)	54
AseI	ATTAAT	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	102
BamHI	GGATCC	2 cut(s)	128, 176
BanII	GRGCYC	2 cut(s)	55, 327
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	54
BmiI	GGNNCC	4 cut(s)	38, 130, 178, 368
BmrFI	CCNGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	3 cut(s)	55, 102, 327
Bsp143I	GATC	5 cut(s)	9, 110, 128, 176, 202
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	4 cut(s)	38, 130, 178, 368
BspPI	GGATC	4 cut(s)	123, 136, 171, 184
BssMI	GATC	5 cut(s)	9, 110, 128, 176, 202
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	223, 231, 245, 299
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	5 cut(s)	12, 113, 131, 179, 205
BstMBI	GATC	5 cut(s)	9, 110, 128, 176, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	128, 176
BstYI	RGATCY	2 cut(s)	128, 176
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	227, 250
CviAII	CATG	3 cut(s)	184, 238, 265
CviJI	RGCY	8 cut(s)	53, 64, 118, 306, 325, 330, 350, 369
CviKI_1	RGCY	8 cut(s)	53, 64, 118, 306, 325, 330, 350, 369
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	5 cut(s)	11, 112, 130, 178, 204
DpnII	GATC	5 cut(s)	9, 110, 128, 176, 202
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	55, 327
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	2 cut(s)	55, 327
FaeI	CATG	3 cut(s)	187, 241, 268
FaiI	YATR	3 cut(s)	185, 239, 266
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	3 cut(s)	183, 237, 264
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	55, 327
Fsp4HI	GCNGC	1 cut(s)	370
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	187, 241, 268
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	43, 76
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	88, 280
Hpy188III	TCNNGA	3 cut(s)	13, 40, 56
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	4 cut(s)	223, 231, 245, 299
HpyCH4IV	ACGT	2 cut(s)	24, 358
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	2 cut(s)	24, 358
Hsp92II	CATG	3 cut(s)	187, 241, 268
Kzo9I	GATC	5 cut(s)	9, 110, 128, 176, 202
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	6 cut(s)	53, 99, 194, 221, 336, 349
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	24, 358
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	5 cut(s)	11, 112, 130, 178, 204
MboI	GATC	5 cut(s)	9, 110, 128, 176, 202
MboII	GAAGA	2 cut(s)	212, 280
MflI	RGATCY	2 cut(s)	128, 176
MhlI	GDGCHC	3 cut(s)	55, 102, 327
MluCI	AATT	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	66, 188, 205, 241, 278, 334
MseI	TTAA	2 cut(s)	135, 216
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	5 cut(s)	9, 110, 128, 176, 202
NlaIII	CATG	3 cut(s)	187, 241, 268
NlaIV	GGNNCC	4 cut(s)	38, 130, 178, 368
NmuCI	GTSAC	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	43, 76
PkrI	GCNGC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	38, 130, 178, 368
PsuI	RGATCY	2 cut(s)	128, 176
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	135, 216
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	5 cut(s)	9, 110, 128, 176, 202
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	3 cut(s)	55, 102, 327
SetI	ASST	7 cut(s)	27, 66, 216, 289, 327, 352, 361
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	4 cut(s)	223, 231, 245, 299
TaiI	ACGT	2 cut(s)	27, 361
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	43, 76
Tru1I	TTAA	2 cut(s)	135, 216
Tru9I	TTAA	2 cut(s)	135, 216
TscAI	CASTG	2 cut(s)	234, 250
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	234, 250
VspI	ATTAAT	1 cut(s)	135
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.