Rmu_ssc0000438.1_g000030

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000438.1
N/A
Physical Location & Seq
Reverse (-)
110470 .. 114325
3856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000438.1_g000030.1.cds

Sequence Viewer

Length: 660 bp
atggctgacgctttcgtttccgtgctactggaacaactggcttcaataacctatcaacaaatagagaaagaggtgagactggttgcggaggtcgagaaagaagttgccaagatcaccagcaatctgaaagctattcaggccgtgctcgaggatgcggagaagaggcaagtcaaggaagccatcgattacccgctacacaaattgaatagtgtaccgggattgcaacaacaccaaacccggttaccacagaaggctttagaggagtggggcgaatacgatggaggaagtttggagcgatttggtggtctgtggagcaagaacaacgccggcgaagaaacccggcccaacatatccaaaactgttacagaaatccggcccaacatatccaaaactgttgcagaaatccagcccaacatatccaaaactgtttcaaaaattcggcccatcaggcctccacccacagctacagtgaggaccttgatccggggcaagcccaggtgcggcccacctgccaccagctacgtaaatcctttccgtgatttacggaaatcagaatcactttcggctaaagctgtctgccacagcgcctcgaaattcatcctgtccccctacgcgctctacacgcgtcaacaacttttccgggttttagggcgactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

219

Amino Acids

24.53

Weight (kDa)

9.67

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 517
AccII CGCG 2 cut(s) 614, 625
AciI CCGC 4 cut(s) 86, 155, 191, 501
AclWI GGATC 1 cut(s) 475
AcsI RAATTY 2 cut(s) 435, 593
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 483, 500
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 3 cut(s) 45, 205, 432
AjnI CCWGG 1 cut(s) 494
AluBI AGCT 4 cut(s) 131, 464, 519, 572
AluI AGCT 4 cut(s) 131, 464, 519, 572
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 6 cut(s) 138, 341, 374, 440, 449, 502
ApoI RAATTY 2 cut(s) 435, 593
AspLEI GCGC 2 cut(s) 587, 616
AspS9I GGNCC 5 cut(s) 342, 375, 441, 474, 503
AsuC2I CCSGG 5 cut(s) 216, 238, 340, 485, 641
AsuHPI GGTGA 2 cut(s) 85, 106
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 3 cut(s) 188, 272, 452
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 496
BcnI CCSGG 5 cut(s) 216, 238, 340, 485, 641
BcoDI GTCTC 1 cut(s) 70
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 448
BisI GCNGC 1 cut(s) 502
BlsI GCNGC 1 cut(s) 503
Bme1390I CCNGG 6 cut(s) 216, 238, 340, 485, 496, 641
Bme18I GGWCC 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 5 cut(s) 342, 375, 441, 474, 503
BmrFI CCNGG 6 cut(s) 216, 238, 340, 485, 496, 641
BmsI GCATC 1 cut(s) 142
BpuMI CCSGG 5 cut(s) 216, 238, 340, 485, 641
Bsa29I ATCGAT 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 484, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 500
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 3 cut(s) 33, 42, 84
BseBI CCWGG 1 cut(s) 496
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 484, 494
BseGI GGATG 2 cut(s) 157, 597
BseLI CCNNNNNNNGG 2 cut(s) 483, 500
BseNI ACTGG 3 cut(s) 33, 42, 84
BseRI GAGGAG 1 cut(s) 275
Bsh1236I CGCG 2 cut(s) 614, 625
BshFI GGCC 6 cut(s) 140, 343, 376, 442, 451, 504
BshVI ATCGAT 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 7 cut(s) 215, 238, 327, 340, 373, 484, 640
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 483, 500
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 589
BsnI GGCC 6 cut(s) 140, 343, 376, 442, 451, 504
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 111, 480
BspACI CCGC 4 cut(s) 86, 155, 191, 501
BspANI GGCC 6 cut(s) 140, 343, 376, 442, 451, 504
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 2 cut(s) 614, 625
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 3 cut(s) 33, 42, 84
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 484, 494
BssMI GATC 2 cut(s) 111, 480
Bst2UI CCWGG 1 cut(s) 496
Bst4CI ACNGT 4 cut(s) 361, 394, 427, 469
Bst6I CTCTTC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 2 cut(s) 328, 491
BstEII GGTNACC 1 cut(s) 240
BstF5I GGATG 2 cut(s) 157, 597
BstFNI CGCG 2 cut(s) 614, 625
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 2 cut(s) 587, 616
BstKTI GATC 2 cut(s) 114, 483
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 111, 480
BstMWI GCNNNNNNNGC 3 cut(s) 137, 448, 622
BstNI CCWGG 1 cut(s) 496
BstPI GGTNACC 1 cut(s) 240
BstSCI CCNGG 6 cut(s) 214, 236, 338, 483, 494, 639
BstSFI CTRYAG 1 cut(s) 465
BstSNI TACGTA 1 cut(s) 523
BstUI CGCG 2 cut(s) 614, 625
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 6 cut(s) 140, 343, 376, 442, 451, 504
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 2 cut(s) 157, 597
BtsIMutI CAGTG 1 cut(s) 474
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 328, 491
CfoI GCGC 2 cut(s) 587, 616
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 5 cut(s) 342, 375, 441, 474, 503
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 2 cut(s) 17, 614
Csp6I GTAC 1 cut(s) 212
CviQI GTAC 1 cut(s) 212
DpnI GATC 2 cut(s) 113, 482
DpnII GATC 2 cut(s) 111, 480
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco105I TACGTA 1 cut(s) 523
Eco147I AGGCCT 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 474
EcoO65I GGTNACC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 494
FaiI YATR 3 cut(s) 350, 383, 416
FaqI GGGAC 1 cut(s) 589
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 502
FokI GGATG 2 cut(s) 164, 584
Fsp4HI GCNGC 1 cut(s) 502
GlaI GCGC 2 cut(s) 586, 615
GluI GCNGC 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 6 cut(s) 140, 343, 376, 442, 451, 504
HapII CCGG 7 cut(s) 215, 238, 327, 340, 373, 484, 640
HgaI GACGC 2 cut(s) 17, 614
HhaI GCGC 2 cut(s) 587, 616
Hin6I GCGC 2 cut(s) 585, 614
HinP1I GCGC 2 cut(s) 585, 614
HincII GTYRAC 1 cut(s) 629
HindII GTYRAC 1 cut(s) 629
HinfI GANTC 1 cut(s) 554
HpaII CCGG 7 cut(s) 215, 238, 327, 340, 373, 484, 640
HphI GGTGA 2 cut(s) 85, 106
Hpy166II GTNNAC 2 cut(s) 212, 629
Hpy188I TCNGA 2 cut(s) 126, 553
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 2 cut(s) 212, 629
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 4 cut(s) 361, 394, 427, 469
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 2 cut(s) 223, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 448, 622
HpySE526I ACGT 1 cut(s) 522
HspAI GCGC 2 cut(s) 585, 614
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 111, 480
LmnI GCTCC 2 cut(s) 292, 312
LweI GCATC 1 cut(s) 142
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 240, 361
MalI GATC 2 cut(s) 113, 482
MboI GATC 2 cut(s) 111, 480
MboII GAAGA 2 cut(s) 172, 344
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 200, 435, 593
MluI ACGCGT 1 cut(s) 623
MnlI CCTC 9 cut(s) 64, 82, 142, 156, 253, 275, 462, 465, 598
MreI CGCCGGCG 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 1 cut(s) 658
MspI CCGG 7 cut(s) 215, 238, 327, 340, 373, 484, 640
MspR9I CCNGG 6 cut(s) 216, 238, 340, 485, 496, 641
MvaI CCWGG 1 cut(s) 496
MvnI CGCG 2 cut(s) 614, 625
MwoI GCNNNNNNNGC 3 cut(s) 137, 448, 622
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 5 cut(s) 216, 238, 340, 485, 641
NdeII GATC 2 cut(s) 111, 480
NgoMIV GCCGGC 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 146
PaqCI CACCTGC 1 cut(s) 517
PceI AGGCCT 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 494
PspEI GGTNACC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 494
PspPI GGNCC 5 cut(s) 342, 375, 441, 474, 503
PspPPI RGGWCCY 1 cut(s) 474
PspXI VCTCGAGB 1 cut(s) 146
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 658
SatI GCNGC 1 cut(s) 502
Sau3AI GATC 2 cut(s) 111, 480
Sau96I GGNCC 5 cut(s) 342, 375, 441, 474, 503
ScrFI CCNGG 6 cut(s) 216, 238, 340, 485, 496, 641
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 465
SfiI GGCCNNNNNGGCC 1 cut(s) 448
Sfr274I CTCGAG 1 cut(s) 146
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 1 cut(s) 474
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SnaBI TACGTA 1 cut(s) 523
Sse9I AATT 3 cut(s) 200, 435, 593
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 4 cut(s) 86, 155, 191, 501
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 6 cut(s) 214, 236, 338, 483, 494, 639
TaaI ACNGT 4 cut(s) 361, 394, 427, 469
TaiI ACGT 1 cut(s) 525
TaqI TCGA 4 cut(s) 93, 147, 183, 590
TasI AATT 3 cut(s) 200, 435, 593
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 1 cut(s) 658
Tru9I TTAA 1 cut(s) 658
TscAI CASTG 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 586
TspGWI ACGGA 3 cut(s) 10, 524, 559
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 2 cut(s) 435, 593
XhoI CTCGAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.