Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000438.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

271435 .. 272976

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggcgaccatatcctcctcctgcttctgcccttacgctatggctcgccccaccagagttcgagcccctcgcaccccttcttcaaagaagccgataccgcccaaccctaaccctaatcacaagcagctcaggcaccggaacggcgccaaggagctggcctccgtcggagttgaggccaccacctacactcgcctgccgcccaagttgttagagtactgtattcagttaatgtttttcatccattctagtgtagccgatatggtgcataagcagcaaaccgcctctattaatgagtttgagatctcttacgacagcggtaccaatacctggcatgttgtgggatctggattacaacggtttgttcagatgacaaattggcgatatatggattctgagagaagattccaacatgttttggatgcttgtggtgtaaacaagaatcttaagaaacgcggtgtcaaagaaggtgacaccgtgcttattggagatatggaaatggtgtggcatgattctgtttctggtccatcaaatttaaagaaaggatctgcagaaacaaccaagtgggctcagtttaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

192

Amino Acids

21.7

Weight (kDa)

9.63

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1967	PF09269	99 - 168	2e-22	Domain of unknown function (DUF1967)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	3 cut(s)	132, 143, 317
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccII	CGCG	1 cut(s)	453
AciI	CCGC	5 cut(s)	98, 197, 279, 315, 453
AclWI	GGATC	2 cut(s)	349, 550
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	215, 319
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	127, 154
AluI	AGCT	2 cut(s)	127, 154
AlwI	GGATC	2 cut(s)	349, 550
AoxI	GGCC	2 cut(s)	156, 174
ApeKI	GCWGC	2 cut(s)	124, 271
ApoI	RAATTY	1 cut(s)	529
AseI	ATTAAT	1 cut(s)	288
Asp718I	GGTACC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BanI	GGYRCC	3 cut(s)	132, 143, 317
BanII	GRGCYC	2 cut(s)	67, 568
BbvI	GCAGC	2 cut(s)	136, 283
BccI	CCATC	1 cut(s)	532
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	328
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	3 cut(s)	125, 197, 272
BlsI	GCNGC	3 cut(s)	126, 198, 273
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	3 cut(s)	134, 145, 319
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	237, 424
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	142, 384
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	136, 283
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	158, 176
BshNI	GGYRCC	3 cut(s)	132, 143, 317
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	327
BsnI	GGCC	2 cut(s)	158, 176
Bsp1286I	GDGCHC	2 cut(s)	67, 568
Bsp143I	GATC	3 cut(s)	300, 341, 542
BspACI	CCGC	5 cut(s)	98, 197, 279, 315, 453
BspANI	GGCC	2 cut(s)	158, 176
BspCNI	CTCAG	2 cut(s)	141, 385
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	134, 145, 319
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	2 cut(s)	349, 550
BspT107I	GGYRCC	3 cut(s)	132, 143, 317
BspTI	CTTAAG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	300, 341, 542
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	3 cut(s)	218, 357, 475
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	46, 156, 194
BstDEI	CTNAG	3 cut(s)	128, 393, 567
BstF5I	GGATG	2 cut(s)	237, 424
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	3 cut(s)	303, 344, 545
BstMBI	GATC	3 cut(s)	300, 341, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 130, 271
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	335, 413
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	136, 283
BstX2I	RGATCY	3 cut(s)	300, 341, 542
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	3 cut(s)	300, 341, 542
BsuRI	GGCC	2 cut(s)	158, 176
BtsCI	GGATG	2 cut(s)	237, 424
Cac8I	GCNNGC	3 cut(s)	46, 156, 194
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	214, 318
CviAII	CATG	3 cut(s)	332, 410, 506
CviJI	RGCY	9 cut(s)	44, 65, 91, 127, 154, 158, 176, 254, 566
CviKI_1	RGCY	9 cut(s)	44, 65, 91, 127, 154, 158, 176, 254, 566
CviQI	GTAC	2 cut(s)	214, 318
DdeI	CTNAG	3 cut(s)	128, 393, 567
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	3 cut(s)	302, 343, 544
DpnII	GATC	3 cut(s)	300, 341, 542
DraI	TTTAAA	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	67, 568
Eco47I	GGWCC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	67, 568
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	335, 413, 509
FatI	CATG	3 cut(s)	331, 409, 505
Fnu4HI	GCNGC	3 cut(s)	125, 197, 272
FokI	GGATG	2 cut(s)	224, 431
FriOI	GRGCYC	2 cut(s)	67, 568
Fsp4HI	GCNGC	3 cut(s)	125, 197, 272
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	125, 197, 272
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	158, 176
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	335, 413, 509
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	4 cut(s)	389, 402, 439, 509
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	167, 366, 394
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	87, 458
HpyCH4III	ACNGT	3 cut(s)	218, 357, 475
HpyCH4V	TGCA	2 cut(s)	265, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 130, 271
HpyF3I	CTNAG	3 cut(s)	128, 393, 567
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	335, 413, 509
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	300, 341, 542
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	136, 283
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	3 cut(s)	302, 343, 544
MboI	GATC	3 cut(s)	300, 341, 542
MboII	GAAGA	2 cut(s)	72, 411
MflI	RGATCY	3 cut(s)	300, 341, 542
MhlI	GDGCHC	2 cut(s)	67, 568
MluCI	AATT	2 cut(s)	373, 529
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	2 cut(s)	145, 430
MnlI	CCTC	6 cut(s)	25, 28, 78, 166, 169, 292
MseI	TTAA	5 cut(s)	227, 288, 444, 533, 573
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	97, 130, 271
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	3 cut(s)	300, 341, 542
NlaIII	CATG	3 cut(s)	335, 413, 509
NlaIV	GGNNCC	3 cut(s)	134, 145, 319
NmuCI	GTSAC	1 cut(s)	467
NspI	RCATGY	2 cut(s)	335, 413
PciI	ACATGT	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	389, 402, 439, 509
PflMI	CCANNNNNTGG	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	126, 198, 273
PluTI	GGCGCC	1 cut(s)	147
PscI	ACATGT	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	134, 145, 319
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	3 cut(s)	300, 341, 542
RsaI	GTAC	2 cut(s)	215, 319
RsaNI	GTAC	2 cut(s)	214, 318
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	227, 288, 444, 533, 573
SatI	GCNGC	3 cut(s)	125, 197, 272
Sau3AI	GATC	3 cut(s)	300, 341, 542
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	67, 568
SetI	ASST	5 cut(s)	129, 156, 185, 329, 469
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	373, 529
SsiI	CCGC	5 cut(s)	98, 197, 279, 315, 453
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	218, 357, 475
TaqI	TCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	373, 529
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	4 cut(s)	389, 402, 439, 509
Tru1I	TTAA	5 cut(s)	227, 288, 444, 533, 573
Tru9I	TTAA	5 cut(s)	227, 288, 444, 533, 573
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	2 cut(s)	124, 271
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	327
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	521
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	2 cut(s)	335, 413
XspI	CTAG	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.