Rmu_ssc0000442.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000442.1
N/A
Physical Location & Seq
Reverse (-)
93192 .. 93518
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgtcaaagtcgaagattggctttcctatacttgactcaactggctcggaatatcatagttgtgtcacggatgttgagaatcatctcacttcaaaaaggatcctacccgtaattcaggcaccaaaccctgagctcatatttgagcgtatggctacgaataatgccatcgccctcatcttgatgagacgtcacatggataaatcactccaatcggaggacatgatgatcaaggatgctagagaattatggattgcgctagaagagcaatttggcaatctcaaggactccctcctccccgacttgaaagttcaatggagcaatctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

108

Amino Acids

12.37

Weight (kDa)

5.54

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 118
AclWI GGATC 2 cut(s) 94, 107
AcyI GRCGYC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 3 cut(s) 93, 304, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 94, 107
AspLEI GCGC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 173
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 2 cut(s) 237, 257
BmiI GGNNCC 2 cut(s) 101, 120
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 76, 238
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 99, 225
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 101, 120
BspPI GGATC 2 cut(s) 94, 107
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 46
BssMI GATC 2 cut(s) 99, 225
BssNI GRCGYC 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 76, 238
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 102, 228
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 99, 225
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 2 cut(s) 76, 238
CfoI GCGC 1 cut(s) 256
CviAII CATG 2 cut(s) 193, 220
CviJI RGCY 4 cut(s) 21, 45, 133, 152
CviKI_1 RGCY 4 cut(s) 21, 45, 133, 152
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 101, 227
DpnII GATC 2 cut(s) 99, 225
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 2 cut(s) 196, 223
FaiI YATR 8 cut(s) 29, 57, 137, 149, 194, 221, 247, 325
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 192, 219
FbaI TGATCA 1 cut(s) 225
FokI GGATG 2 cut(s) 83, 245
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 2 cut(s) 237, 257
GlaI GCGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 2 cut(s) 196, 223
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 3 cut(s) 35, 79, 284
Hpy188I TCNGA 2 cut(s) 49, 214
Hpy188III TCNNGA 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 2 cut(s) 196, 223
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 99, 225
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 3 cut(s) 27, 101, 141
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 237, 257
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 64, 188
MalI GATC 2 cut(s) 101, 227
MboI GATC 2 cut(s) 99, 225
MboII GAAGA 2 cut(s) 25, 272
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 111, 242, 266
MlyI GAGTC 2 cut(s) 29, 278
MnlI CCTC 4 cut(s) 182, 208, 299, 302
MslI CAYNNNNRTG 2 cut(s) 60, 179
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 2 cut(s) 99, 225
NlaIII CATG 2 cut(s) 196, 223
NlaIV GGNNCC 2 cut(s) 101, 120
NmuCI GTSAC 2 cut(s) 64, 188
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 79
PleI GAGTC 2 cut(s) 29, 278
PpsI GAGTC 2 cut(s) 29, 278
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 101, 120
PsuI RGATCY 1 cut(s) 99
RseI CAYNNNNRTG 2 cut(s) 60, 179
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 99, 225
SchI GAGTC 2 cut(s) 29, 278
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 135, 190
SfaNI GCATC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 60, 179
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 111, 242, 266
SspMI CTAG 2 cut(s) 237, 257
SstI GAGCTC 1 cut(s) 135
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 111, 242, 266
TfiI GAWTC 1 cut(s) 79
TseFI GTSAC 2 cut(s) 64, 188
Tsp45I GTSAC 2 cut(s) 64, 188
TspGWI ACGGA 1 cut(s) 83
XspI CTAG 2 cut(s) 237, 257
ZraI GACGTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.