Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000454.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

85775 .. 93174

Gene Structure 7400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgaagggagctgcgcttgtggcttttgctgctacaattggtaactttctgcaaggatgggacaatgctacaattgctggggctattgtttacatcacggacgattttgatttaggtagctcggtagaagttcctgtgttgattgtgtcactcattcttctagtcattgccaacttagttaccctaagttcagtcgttgaagccgcaatatcaaccacttgtgtgataatctttttctgtgtctttgtcacggcctatgggccaatcccaaatatcctctgctccgagatctttccgacgagggtgcgcggcctctgcattgccatctgtgccctggcgtactggatttcagacattatcgtcacctactcgcttccagttctgcttgattcaataggcctagctgtttattggggggcaataaaacaggacaccggtcaccgaattccagaggccaatgaccgaattctggcagcagttgaccggagtccagcggcctacgatcgtagtccgcctgtgtacaatgtccatataagtttttcatgtcccagagacggtgcagttttgcactacgttcgaagtatacaggtaagagacctggaaagggaggcaaccgattctggaagagtattgagctgggctaaagaccccagggatgctattgaagaagaccacagttcggttgaagaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

4.65

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	50 - 138	6.2e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	309
AciI	CCGC	4 cut(s)	204, 309, 494, 512
AcsI	RAATTY	2 cut(s)	444, 465
AfaI	GTAC	2 cut(s)	341, 521
AfiI	CCNNNNNNNGG	4 cut(s)	469, 554, 604, 679
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	200, 393, 665, 686
AjnI	CCWGG	3 cut(s)	333, 597, 650
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	4 cut(s)	11, 120, 404, 636
AluI	AGCT	4 cut(s)	11, 120, 404, 636
Alw26I	GTCTC	2 cut(s)	546, 588
AoxI	GGCC	6 cut(s)	252, 260, 310, 397, 453, 495
ApeKI	GCWGC	3 cut(s)	11, 29, 473
ApoI	RAATTY	2 cut(s)	444, 465
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	16, 309
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	355, 431
AsuII	TTCGAA	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	675
BbvI	GCAGC	2 cut(s)	16, 485
BccI	CCATC	2 cut(s)	51, 332
BceAI	ACGGC	1 cut(s)	267
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 557, 591
BciT130I	CCWGG	3 cut(s)	335, 599, 652
BcoDI	GTCTC	2 cut(s)	546, 588
BfaI	CTAG	2 cut(s)	161, 401
BfmI	CTRYAG	1 cut(s)	692
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	6 cut(s)	12, 30, 204, 310, 474, 495
BlsI	GCNGC	6 cut(s)	13, 31, 205, 311, 475, 496
Bme1390I	CCNGG	3 cut(s)	335, 599, 652
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	3 cut(s)	335, 599, 652
BmsI	GCATC	1 cut(s)	646
BoxI	GACNNNNGTC	2 cut(s)	435, 486
BpiI	GAAGAC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	577
BsaI	GGTCTC	1 cut(s)	588
BsaJI	CCNNGG	3 cut(s)	333, 650, 651
BsaWI	WCCGGW	2 cut(s)	434, 483
Bsc4I	CCNNNNNNNGG	4 cut(s)	469, 554, 604, 679
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	347, 377
Bse3DI	GCAATG	2 cut(s)	165, 318
BseBI	CCWGG	3 cut(s)	335, 599, 652
BseDI	CCNNGG	3 cut(s)	333, 650, 651
BseGI	GGATG	2 cut(s)	62, 661
BseLI	CCNNNNNNNGG	4 cut(s)	469, 554, 604, 679
BseMI	GCAATG	2 cut(s)	165, 318
BseNI	ACTGG	2 cut(s)	347, 377
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	16, 485
BseYI	CCCAGC	2 cut(s)	77, 636
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	6 cut(s)	254, 262, 312, 399, 455, 497
BshTI	ACCGGT	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	435, 484
BslFI	GGGAC	2 cut(s)	74, 531
BslI	CCNNNNNNNGG	4 cut(s)	469, 554, 604, 679
BsmAI	GTCTC	2 cut(s)	546, 588
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	2 cut(s)	74, 531
BsnI	GGCC	6 cut(s)	254, 262, 312, 399, 455, 497
Bso31I	GGTCTC	1 cut(s)	588
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	288, 502
BspACI	CCGC	4 cut(s)	204, 309, 494, 512
BspANI	GGCC	6 cut(s)	254, 262, 312, 399, 455, 497
BspFNI	CGCG	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	588
BsrDI	GCAATG	2 cut(s)	165, 318
BsrFI	RCCGGY	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	347, 377
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	3 cut(s)	333, 650, 651
BssMI	GATC	2 cut(s)	288, 502
BssNAI	GTATAC	1 cut(s)	584
Bst1107I	GTATAC	1 cut(s)	584
Bst2UI	CCWGG	3 cut(s)	335, 599, 652
Bst4CI	ACNGT	3 cut(s)	557, 677, 693
Bst6I	CTCTTC	1 cut(s)	619
BstAUI	TGTACA	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	577
BstDEI	CTNAG	2 cut(s)	175, 185
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	62, 661
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	2 cut(s)	16, 309
BstKTI	GATC	2 cut(s)	291, 505
BstMAI	GTCTC	2 cut(s)	546, 588
BstMBI	GATC	2 cut(s)	288, 502
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 29, 74, 315, 329
BstNI	CCWGG	3 cut(s)	335, 599, 652
BstPAI	GACNNNNGTC	2 cut(s)	435, 486
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	333, 597, 650
BstSFI	CTRYAG	1 cut(s)	692
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	16, 485
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	584
BsuRI	GGCC	6 cut(s)	254, 262, 312, 399, 455, 497
BtsCI	GGATG	2 cut(s)	62, 661
CfoI	GCGC	2 cut(s)	16, 309
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	340, 520
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	1 cut(s)	543
CviQI	GTAC	2 cut(s)	340, 520
DdeI	CTNAG	2 cut(s)	175, 185
DpnI	GATC	2 cut(s)	290, 504
DpnII	GATC	2 cut(s)	288, 502
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
EciI	GGCGGA	1 cut(s)	501
Eco147I	AGGCCT	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	588
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRI	GAATTC	2 cut(s)	444, 465
EcoRII	CCWGG	3 cut(s)	333, 597, 650
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	1 cut(s)	546
FaiI	YATR	5 cut(s)	258, 531, 533, 544, 584
FaqI	GGGAC	2 cut(s)	74, 531
FatI	CATG	1 cut(s)	542
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	6 cut(s)	12, 30, 204, 310, 474, 495
FokI	GGATG	2 cut(s)	69, 668
Fsp4HI	GCNGC	6 cut(s)	12, 30, 204, 310, 474, 495
FspBI	CTAG	2 cut(s)	161, 401
GlaI	GCGC	2 cut(s)	15, 308
GluI	GCNGC	6 cut(s)	12, 30, 204, 310, 474, 495
GsaI	CCCAGC	2 cut(s)	81, 640
HaeIII	GGCC	6 cut(s)	254, 262, 312, 399, 455, 497
HapII	CCGG	2 cut(s)	435, 484
HhaI	GCGC	2 cut(s)	16, 309
Hin1II	CATG	1 cut(s)	546
Hin6I	GCGC	2 cut(s)	14, 307
HinP1I	GCGC	2 cut(s)	14, 307
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	389, 487, 617
HpaII	CCGG	2 cut(s)	435, 484
HphI	GGTGA	2 cut(s)	355, 431
Hpy166II	GTNNAC	4 cut(s)	91, 481, 520, 584
Hpy188I	TCNGA	3 cut(s)	286, 297, 352
Hpy188III	TCNNGA	2 cut(s)	449, 621
Hpy8I	GTNNAC	4 cut(s)	91, 481, 520, 584
Hpy99I	CGWCG	1 cut(s)	301
HpyCH4III	ACNGT	3 cut(s)	557, 677, 693
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	4 cut(s)	52, 318, 560, 568
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 29, 74, 315, 329
HpyF3I	CTNAG	2 cut(s)	175, 185
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	546
HspAI	GCGC	2 cut(s)	14, 307
Kzo9I	GATC	2 cut(s)	288, 502
LmnI	GCTCC	2 cut(s)	8, 287
Lsp1109I	GCAGC	2 cut(s)	16, 485
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	161, 401
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	6 cut(s)	41, 147, 178, 247, 361, 437
MalI	GATC	2 cut(s)	290, 504
MboI	GATC	2 cut(s)	288, 502
MboII	GAAGA	4 cut(s)	149, 636, 677, 680
MfeI	CAATTG	2 cut(s)	36, 72
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	4 cut(s)	36, 72, 444, 465
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	5 cut(s)	287, 294, 323, 445, 601
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	435, 484
MspR9I	CCNGG	3 cut(s)	335, 599, 652
MunI	CAATTG	2 cut(s)	36, 72
MvaI	CCWGG	3 cut(s)	335, 599, 652
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	5 cut(s)	20, 29, 74, 315, 329
NdeII	GATC	2 cut(s)	288, 502
NlaIII	CATG	1 cut(s)	546
NmuCI	GTSAC	4 cut(s)	147, 247, 361, 437
NspV	TTCGAA	1 cut(s)	577
OliI	CACNNNNGTG	1 cut(s)	221
PasI	CCCWGGG	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	389, 617
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	13, 31, 205, 311, 475, 496
Ple19I	CGATCG	1 cut(s)	505
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PshAI	GACNNNNGTC	2 cut(s)	435, 486
Psp6I	CCWGG	3 cut(s)	333, 597, 650
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	2 cut(s)	77, 636
PspGI	CCWGG	3 cut(s)	333, 597, 650
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	288
PvuI	CGATCG	1 cut(s)	505
RsaI	GTAC	2 cut(s)	341, 521
RsaNI	GTAC	2 cut(s)	340, 520
RseI	CAYNNNNRTG	1 cut(s)	221
SatI	GCNGC	6 cut(s)	12, 30, 204, 310, 474, 495
Sau3AI	GATC	2 cut(s)	288, 502
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	3 cut(s)	335, 599, 652
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	9 cut(s)	13, 118, 122, 368, 406, 576, 591, 600, 638
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	692
SfuI	TTCGAA	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	36, 72, 444, 465
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	204, 309, 494, 512
SspMI	CTAG	2 cut(s)	161, 401
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	3 cut(s)	333, 597, 650
TaaI	ACNGT	3 cut(s)	557, 677, 693
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	577
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	4 cut(s)	36, 72, 444, 465
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	3 cut(s)	206, 312, 497
TfiI	GAWTC	2 cut(s)	389, 617
TseFI	GTSAC	4 cut(s)	147, 247, 361, 437
TseI	GCWGC	3 cut(s)	11, 29, 473
Tsp45I	GTSAC	4 cut(s)	147, 247, 361, 437
TspDTI	ATGAA	2 cut(s)	17, 531
TspGWI	ACGGA	1 cut(s)	113
XapI	RAATTY	2 cut(s)	444, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	2 cut(s)	161, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.