Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000461.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

127 .. 513

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggcgtcggagctagggcaacagacggtggacctctccacggtggtgaaccgcgccgcggaggagtcgttcctctctttaaaggagctcatggagaaatcgaaggcggcggcgccggagctctccgataccgataagaaaatagggctgctcaagtacttggtcaagacccagcaacgcatgctccggctcaatgtcctcgccaagtggtgccagcaggtctcggactctctctgttttctgggttttcgatttggaccggaaaagtttgaatcttggtttgctctgttatcaatggaaattttgaaattagggtttttgaatttgagtgagtttctgtttcaaaggttcgagctttatgggtttccagatagtctgggtagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008284 GO:0009266 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009631 GO:0009814 GO:0016591 GO:0016592 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0042127 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045087 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055029 GO:0055044 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0090575 GO:0098542 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med14

Protein Analysis

128

Amino Acids

14.58

Weight (kDa)

5.52

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med14	PF08638	9 - 76	6.8e-14	Mediator complex subunit MED14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	2 cut(s)	112, 210
AccII	CGCG	2 cut(s)	54, 59
AciI	CCGC	5 cut(s)	52, 57, 59, 107, 110
AcsI	RAATTY	2 cut(s)	300, 322
AcyI	GRCGYC	2 cut(s)	5, 113
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	40, 58
AgsI	TTSAA	4 cut(s)	272, 307, 322, 344
AleI	CACNNNNGTG	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	13, 88, 121, 355
AluI	AGCT	4 cut(s)	13, 88, 121, 355
Alw21I	GWGCWC	2 cut(s)	90, 123
Alw26I	GTCTC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	300, 322
AspLEI	GCGC	2 cut(s)	56, 115
AspS9I	GGNCC	2 cut(s)	31, 257
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	31, 257
BanI	GGYRCC	2 cut(s)	112, 210
BanII	GRGCYC	2 cut(s)	90, 123
Bbv12I	GWGCWC	2 cut(s)	90, 123
BbvI	GCAGC	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	4 cut(s)	57, 108, 111, 149
BlsI	GCNGC	4 cut(s)	58, 109, 112, 150
BmcAI	AGTACT	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	31, 257
BmgT120I	GGNCC	2 cut(s)	31, 257
BmiI	GGNNCC	2 cut(s)	114, 212
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	5, 113
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	39, 57
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 58
BseDI	CCNNGG	2 cut(s)	39, 57
BseLI	CCNNNNNNNGG	2 cut(s)	40, 58
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	54, 59
BshNI	GGYRCC	2 cut(s)	112, 210
BsiHKAI	GWGCWC	2 cut(s)	90, 123
BsiSI	CCGG	3 cut(s)	116, 187, 260
BslI	CCNNNNNNNGG	2 cut(s)	40, 58
BsmAI	GTCTC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	90, 123
BspACI	CCGC	5 cut(s)	52, 57, 59, 107, 110
BspFNI	CGCG	2 cut(s)	54, 59
BspLI	GGNNCC	2 cut(s)	114, 212
BspMI	ACCTGC	1 cut(s)	208
BspT107I	GGYRCC	2 cut(s)	112, 210
BspTNI	GGTCTC	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	39, 57
BssNI	GRCGYC	2 cut(s)	5, 113
Bst4CI	ACNGT	2 cut(s)	28, 43
BstACI	GRCGYC	2 cut(s)	5, 113
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	182, 215
BstDSI	CCRYGG	2 cut(s)	39, 57
BstFNI	CGCG	2 cut(s)	54, 59
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	56, 115
BstMAI	GTCTC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	184
BstUI	CGCG	2 cut(s)	54, 59
BstV1I	GCAGC	1 cut(s)	135
BtgI	CCRYGG	2 cut(s)	39, 57
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	182, 215
CfoI	GCGC	2 cut(s)	56, 115
Cfr13I	GGNCC	2 cut(s)	31, 257
Cfr42I	CCGCGG	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	91, 181
CviJI	RGCY	6 cut(s)	13, 88, 121, 148, 190, 355
CviKI_1	RGCY	6 cut(s)	13, 88, 121, 148, 190, 355
CviQI	GTAC	1 cut(s)	157
DinI	GGCGCC	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	81
Ecl136II	GAGCTC	2 cut(s)	88, 121
Eco24I	GRGCYC	2 cut(s)	90, 123
Eco31I	GGTCTC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	31, 257
Eco53kI	GAGCTC	2 cut(s)	88, 121
EcoICRI	GAGCTC	2 cut(s)	88, 121
EcoT38I	GRGCYC	2 cut(s)	90, 123
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
FaeI	CATG	2 cut(s)	94, 184
FaiI	YATR	3 cut(s)	92, 182, 360
FatI	CATG	2 cut(s)	90, 180
Fnu4HI	GCNGC	4 cut(s)	57, 108, 111, 149
FriOI	GRGCYC	2 cut(s)	90, 123
Fsp4HI	GCNGC	4 cut(s)	57, 108, 111, 149
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	55, 114
GluI	GCNGC	4 cut(s)	57, 108, 111, 149
GsaI	CCCAGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	116
HapII	CCGG	3 cut(s)	116, 187, 260
HhaI	GCGC	2 cut(s)	56, 115
Hin1I	GRCGYC	2 cut(s)	5, 113
Hin1II	CATG	2 cut(s)	94, 184
Hin6I	GCGC	2 cut(s)	54, 113
HinP1I	GCGC	2 cut(s)	54, 113
HinfI	GANTC	3 cut(s)	65, 227, 272
HpaII	CCGG	3 cut(s)	116, 187, 260
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	31, 49
Hpy188I	TCNGA	3 cut(s)	10, 127, 226
Hpy188III	TCNNGA	2 cut(s)	166, 368
Hpy8I	GTNNAC	2 cut(s)	31, 49
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	28, 43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	5, 113
Hsp92II	CATG	2 cut(s)	94, 184
HspAI	GCGC	2 cut(s)	54, 113
KasI	GGCGCC	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	60
LmnI	GCTCC	4 cut(s)	10, 85, 118, 189
LpnPI	CCDG	9 cut(s)	129, 185, 200, 203, 227, 227, 273, 362, 381
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	90, 123
MluCI	AATT	3 cut(s)	300, 308, 322
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	74, 221
MnlI	CCTC	4 cut(s)	44, 55, 83, 209
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	3 cut(s)	116, 187, 260
MvnI	CGCG	2 cut(s)	54, 59
MwoI	GCNNNNNNNGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	94, 184
NlaIV	GGNNCC	2 cut(s)	114, 212
NspI	RCATGY	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	58, 109, 112, 150
PleI	GAGTC	2 cut(s)	73, 221
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	2 cut(s)	73, 221
Psp124BI	GAGCTC	2 cut(s)	90, 123
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	114, 212
PspPI	GGNCC	2 cut(s)	31, 257
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	2 cut(s)	90, 123
SacII	CCGCGG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	4 cut(s)	57, 108, 111, 149
Sau96I	GGNCC	2 cut(s)	31, 257
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	2 cut(s)	74, 221
SduI	GDGCHC	2 cut(s)	90, 123
SetI	ASST	7 cut(s)	15, 36, 90, 123, 222, 350, 357
SfoI	GGCGCC	1 cut(s)	114
Sfr303I	CCGCGG	1 cut(s)	60
SgrBI	CCGCGG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	31, 257
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	3 cut(s)	300, 308, 322
SsiI	CCGC	5 cut(s)	52, 57, 59, 107, 110
SspDI	GGCGCC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	2 cut(s)	90, 123
TaaI	ACNGT	2 cut(s)	28, 43
TaqI	TCGA	3 cut(s)	101, 250, 351
TasI	AATT	3 cut(s)	300, 308, 322
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	3 cut(s)	59, 110, 113
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseI	GCWGC	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	31, 257
XapI	RAATTY	2 cut(s)	300, 322
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.