Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000465.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

80069 .. 84643

Gene Structure 4575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgccagaatccgattaccagtccggtaaccggattcttgattctggtcaccggtcgccggagtcccgtcaccgaagtctgcggccggccactggtcaccggagtccgaaaggctcacagctcatctccccacaacccaaaaaacgcgccggaaaaatgtcgtcgccgagcaaacgccgggagatggatttgatgaaactgatgatgagtgattacaaggtggagatgatcaatgatggcatgcaggagttttttgtggatttcaatggacccaaagagagtccttatcagggaggtgtgtggaggatacgggtggagctaccagatgcttatccttataaatctccatctataggctttgtcaacaagatctaccacccaaatgtagatgaaatgtcgggatcagtttgtttagatgttatcaaccagacttggagtcccatgtttgatctggttaatgtgtttgaagtctttcttccacaacttcttttatatccaaatccatcggatcccttgaacggagaagctgctgctctgatgatgcgtgatcggactgcttatgagcaaagagtaaaagagttctgtgagaaatacgcaaagccagaagatataggagctgcccaagaagagaaatccagtgatgaagagctgagtgaagatgaatatgcctccagtgatgatgaggcagttgcaggcaaagctgatccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

236

Amino Acids

26.71

Weight (kDa)

5.01

Isoelectric Point (pI)

68.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	61 - 194	3.2e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	4 cut(s)	409, 503, 516, 698
AcoI	YGGCCR	2 cut(s)	83, 87
AfiI	CCNNNNNNNGG	7 cut(s)	30, 58, 92, 184, 290, 353, 518
AgeI	ACCGGT	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	265, 467, 517
AhdI	GACNNNNNGTC	1 cut(s)	435
AluBI	AGCT	6 cut(s)	121, 319, 527, 617, 649, 701
AluI	AGCT	6 cut(s)	121, 319, 527, 617, 649, 701
AlwI	GGATC	4 cut(s)	409, 503, 516, 698
AoxI	GGCC	2 cut(s)	83, 87
ApeKI	GCWGC	3 cut(s)	527, 530, 617
AsiGI	ACCGGT	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	41, 62, 89
AvaII	GGWCC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	508
BbvI	GCAGC	3 cut(s)	514, 517, 604
BccI	CCATC	4 cut(s)	178, 230, 355, 511
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	4 cut(s)	83, 528, 531, 618
BlsI	GCNGC	4 cut(s)	84, 529, 532, 619
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	269
BmeRI	GACNNNNNGTC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	271, 510
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	316, 531
BpmI	CTGGAG	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	330
BsaWI	WCCGGW	4 cut(s)	23, 30, 51, 99
Bsc4I	CCNNNNNNNGG	7 cut(s)	30, 58, 92, 184, 290, 353, 518
Bse118I	RCCGGY	2 cut(s)	51, 85
Bse1I	ACTGG	4 cut(s)	19, 97, 636, 672
Bse8I	GATNNNNATC	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	7 cut(s)	30, 58, 92, 184, 290, 353, 518
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	4 cut(s)	19, 97, 636, 672
BseX3I	CGGCCG	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	514, 517, 604
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	2 cut(s)	56, 86
BshFI	GGCC	2 cut(s)	85, 89
BshTI	ACCGGT	1 cut(s)	51
BsiEI	CGRYCG	2 cut(s)	56, 86
BsiSI	CCGG	8 cut(s)	24, 31, 52, 59, 86, 100, 150, 178
BslFI	GGGAC	2 cut(s)	49, 423
BslI	CCNNNNNNNGG	7 cut(s)	30, 58, 92, 184, 290, 353, 518
BsmFI	GGGAC	2 cut(s)	49, 423
BsnI	GGCC	2 cut(s)	85, 89
Bsp143I	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	85, 89
BspCNI	CTCAG	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	271, 510
BspPI	GGATC	4 cut(s)	409, 503, 516, 698
BspQI	GCTCTTC	1 cut(s)	639
BsrFI	RCCGGY	2 cut(s)	51, 85
BsrI	ACTGG	4 cut(s)	19, 97, 636, 672
BssAI	RCCGGY	2 cut(s)	51, 85
BssMI	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
Bst6I	CTCTTC	2 cut(s)	621, 639
BstC8I	GCNNGC	3 cut(s)	87, 242, 694
BstDEI	CTNAG	1 cut(s)	650
BstEII	GGTNACC	3 cut(s)	26, 47, 95
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	7 cut(s)	231, 372, 404, 451, 511, 550, 706
BstMBI	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
BstMCI	CGRYCG	2 cut(s)	56, 86
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNSI	RCATGY	1 cut(s)	244
BstPI	GGTNACC	3 cut(s)	26, 47, 95
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	514, 517, 604
BstX2I	RGATCY	2 cut(s)	369, 508
BstYI	RGATCY	2 cut(s)	369, 508
BstZI	CGGCCG	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	85, 89
BtsIMutI	CAGTG	3 cut(s)	90, 643, 679
Cac8I	GCNNGC	3 cut(s)	87, 242, 694
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	2 cut(s)	51, 85
Cfr13I	GGNCC	1 cut(s)	269
CspAI	ACCGGT	1 cut(s)	51
CviAII	CATG	2 cut(s)	241, 442
DdeI	CTNAG	1 cut(s)	650
DpnI	GATC	7 cut(s)	230, 371, 403, 450, 510, 549, 705
DpnII	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
DriI	GACNNNNNGTC	1 cut(s)	435
EaeI	YGGCCR	2 cut(s)	83, 87
EagI	CGGCCG	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	621, 639
Eam1105I	GACNNNNNGTC	1 cut(s)	435
EarI	CTCTTC	2 cut(s)	621, 639
EclXI	CGGCCG	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	269
Eco52I	CGGCCG	1 cut(s)	83
Eco91I	GGTNACC	3 cut(s)	26, 47, 95
EcoO65I	GGTNACC	3 cut(s)	26, 47, 95
FaeI	CATG	2 cut(s)	244, 445
FaiI	YATR	9 cut(s)	242, 339, 353, 443, 493, 561, 611, 666, 709
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	2 cut(s)	49, 423
FatI	CATG	2 cut(s)	240, 441
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	83, 528, 531, 618
FseI	GGCCGGCC	1 cut(s)	89
Fsp4HI	GCNGC	4 cut(s)	83, 528, 531, 618
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	83, 528, 531, 618
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	85, 89
HapII	CCGG	8 cut(s)	24, 31, 52, 59, 86, 100, 150, 178
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	244, 445
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	7 cut(s)	8, 34, 41, 62, 103, 280, 436
HpaII	CCGG	8 cut(s)	24, 31, 52, 59, 86, 100, 150, 178
HphI	GGTGA	3 cut(s)	41, 62, 89
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	5 cut(s)	13, 108, 508, 537, 552
Hpy188III	TCNNGA	2 cut(s)	38, 399
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	244, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	1 cut(s)	650
Hsp92II	CATG	2 cut(s)	244, 445
HspAI	GCGC	1 cut(s)	147
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	316, 614
Lsp1109I	GCAGC	3 cut(s)	514, 517, 604
LweI	GCATC	2 cut(s)	316, 531
MaeIII	GTNAC	4 cut(s)	26, 47, 68, 95
MalI	GATC	7 cut(s)	230, 371, 403, 450, 510, 549, 705
MboI	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
MboII	GAAGA	5 cut(s)	467, 617, 638, 656, 668
MflI	RGATCY	2 cut(s)	369, 508
MlyI	GAGTC	4 cut(s)	71, 112, 289, 445
MnlI	CCTC	4 cut(s)	287, 297, 676, 679
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	8 cut(s)	24, 31, 52, 59, 86, 100, 150, 178
MspR9I	CCNGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	698
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	244, 445
NlaIV	GGNNCC	2 cut(s)	271, 510
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	3 cut(s)	47, 68, 95
NspI	RCATGY	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	639
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	8, 34, 41
PinAI	ACCGGT	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	84, 529, 532, 619
PleI	GAGTC	4 cut(s)	70, 111, 288, 444
PpsI	GAGTC	4 cut(s)	70, 111, 288, 444
PsiI	TTATAA	1 cut(s)	339
PspEI	GGTNACC	3 cut(s)	26, 47, 95
PspN4I	GGNNCC	2 cut(s)	271, 510
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	369, 508
RigI	GGCCGGCC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	4 cut(s)	83, 528, 531, 618
Sau3AI	GATC	7 cut(s)	228, 369, 401, 448, 508, 547, 703
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	4 cut(s)	71, 112, 289, 445
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	8 cut(s)	123, 222, 298, 321, 529, 619, 651, 703
SfaNI	GCATC	2 cut(s)	316, 531
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	381
SphI	GCATGC	1 cut(s)	244
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	177
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	8, 34, 41
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	3 cut(s)	97, 643, 679
TseFI	GTSAC	3 cut(s)	47, 68, 95
TseI	GCWGC	3 cut(s)	527, 530, 617
Tsp45I	GTSAC	3 cut(s)	47, 68, 95
TspDTI	ATGAA	4 cut(s)	209, 405, 657, 675
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	3 cut(s)	97, 643, 679
VpaK11BI	GGWCC	1 cut(s)	269
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.