Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000466.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1816

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

tacagtttggttttcagcgaggccttgttggcgccggcgattccctccgtctctgctcgtgccggaggcattttcttgccgctggtgaagtcactctgcgtcgcctgcggtagcaatgtcggcgacgggaccgaaggcaaattgggatcgtggttgatgctcacgtgctttcagacgtcggtgatttcgtcggccatgttcttaactgccatggcggccaatccgttgagcgcgaatttaaccttcaacacgattaagcagacgattgggtggaccgactgggctaaggcggcgattgtgcccggtttggtttcactgattgtggtgcctttgttgctgtacttgatttacccgccgtccgtgaagagcagccctgacgcgcccaaacttgcaagggagaatctgaagaatatgggtcccatgtccaagaacgaggttataatggctgccactctgtttcttacgacagttttgatgaaagagaaggtcgaaaagcaaacgaggaggaggaggcacctccaaccacgccgatgcaacaacctgatatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

9.81

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_sulph_symp	PF00939	1 - 157	4.5e-46	Sodium:sulfate symporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AatII	GACGTC	1 cut(s)	179
AccB1I	GGYRCC	3 cut(s)	31, 325, 513
AccII	CGCG	2 cut(s)	233, 380
AciI	CCGC	5 cut(s)	80, 108, 215, 290, 353
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	2 cut(s)	192, 216
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	425
AcvI	CACGTG	1 cut(s)	165
AcyI	GRCGYC	2 cut(s)	32, 176
AfaI	GTAC	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	3 cut(s)	21, 192, 216
ApeKI	GCWGC	2 cut(s)	369, 446
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	3 cut(s)	34, 233, 382
AspS9I	GGNCC	3 cut(s)	129, 273, 416
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	97, 193
AvaII	GGWCC	3 cut(s)	129, 273, 416
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	3 cut(s)	31, 325, 513
BauI	CACGAG	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	381, 433
BceAI	ACGGC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	55
BfoI	RGCGCY	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	29, 215
BisI	GCNGC	5 cut(s)	80, 216, 291, 370, 447
BlsI	GCNGC	5 cut(s)	81, 217, 292, 371, 448
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	3 cut(s)	129, 273, 416
BmgT120I	GGNCC	3 cut(s)	129, 273, 416
BmiI	GGNNCC	6 cut(s)	33, 130, 327, 417, 418, 515
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	2 cut(s)	147, 521
BmuI	ACTGGG	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	32, 176
BsaJI	CCNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	3 cut(s)	517, 520, 523
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	381, 433
Bsh1236I	CGCG	2 cut(s)	233, 380
BshFI	GGCC	3 cut(s)	23, 194, 218
BshNI	GGYRCC	3 cut(s)	31, 325, 513
BsiSI	CCGG	3 cut(s)	35, 63, 303
BslFI	GGGAC	2 cut(s)	142, 402
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	142, 402
BsnI	GGCC	3 cut(s)	23, 194, 218
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	146
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	5 cut(s)	80, 108, 215, 290, 353
BspANI	GGCC	3 cut(s)	23, 194, 218
BspFNI	CGCG	2 cut(s)	233, 380
BspLI	GGNNCC	6 cut(s)	33, 130, 327, 417, 418, 515
BspPI	GGATC	1 cut(s)	154
BspQI	GCTCTTC	1 cut(s)	359
BspT107I	GGYRCC	3 cut(s)	31, 325, 513
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	146
BssNI	GRCGYC	2 cut(s)	32, 176
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	5, 469
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	2 cut(s)	32, 176
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	36, 106
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	233, 380
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	3 cut(s)	34, 233, 382
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 105, 120, 215, 290, 334
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	2 cut(s)	233, 380
BstV1I	GCAGC	2 cut(s)	381, 433
BsuRI	GGCC	3 cut(s)	23, 194, 218
BtgI	CCRYGG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	36, 106
CfoI	GCGC	3 cut(s)	34, 233, 382
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	129, 273, 416
CseI	GACGC	2 cut(s)	88, 386
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	196, 211, 421
CviJI	RGCY	6 cut(s)	23, 194, 218, 284, 372, 446
CviKI_1	RGCY	6 cut(s)	23, 194, 218, 284, 372, 446
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	285
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	192, 216
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	23
Eco47I	GGWCC	3 cut(s)	129, 273, 416
Eco57I	CTGAAG	1 cut(s)	425
Eco72I	CACGTG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	199, 214, 424
FaiI	YATR	6 cut(s)	197, 212, 413, 422, 440, 547
FaqI	GGGAC	2 cut(s)	142, 402
FatI	CATG	3 cut(s)	195, 210, 420
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	80, 216, 291, 370, 447
Fsp4HI	GCNGC	5 cut(s)	80, 216, 291, 370, 447
GlaI	GCGC	3 cut(s)	33, 232, 381
GluI	GCNGC	5 cut(s)	80, 216, 291, 370, 447
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	23, 194, 218
HapII	CCGG	3 cut(s)	35, 63, 303
HgaI	GACGC	2 cut(s)	88, 386
HhaI	GCGC	3 cut(s)	34, 233, 382
Hin1I	GRCGYC	2 cut(s)	32, 176
Hin1II	CATG	3 cut(s)	199, 214, 424
Hin6I	GCGC	3 cut(s)	32, 231, 380
HinP1I	GCGC	3 cut(s)	32, 231, 380
HinfI	GANTC	2 cut(s)	40, 400
HpaII	CCGG	3 cut(s)	35, 63, 303
HphI	GGTGA	2 cut(s)	97, 193
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	174, 405
Hpy8I	GTNNAC	1 cut(s)	273
Hpy99I	CGWCG	4 cut(s)	104, 128, 181, 193
HpyAV	CCTTC	3 cut(s)	128, 253, 478
HpyCH4III	ACNGT	2 cut(s)	5, 469
HpyCH4IV	ACGT	2 cut(s)	164, 176
HpyCH4V	TGCA	2 cut(s)	392, 534
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 105, 120, 215, 290, 334
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	164, 176
Hsp92I	GRCGYC	2 cut(s)	32, 176
Hsp92II	CATG	3 cut(s)	199, 214, 424
HspAI	GCGC	3 cut(s)	32, 231, 380
KasI	GGCGCC	1 cut(s)	31
KflI	GGGWCCC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	146
LguI	GCTCTTC	1 cut(s)	359
LpnPI	CCDG	7 cut(s)	48, 68, 76, 118, 265, 316, 387
Lsp1109I	GCAGC	2 cut(s)	381, 433
LweI	GCATC	2 cut(s)	147, 521
MaeII	ACGT	2 cut(s)	164, 176
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	376, 418
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	140, 235
Mly113I	GGCGCC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	9 cut(s)	13, 55, 59, 427, 495, 498, 501, 504, 527
MreI	CGCCGGCG	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	3 cut(s)	203, 239, 255
MslI	CAYNNNNRTG	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	3 cut(s)	35, 63, 303
MspR9I	CCNGG	1 cut(s)	303
MvnI	CGCG	2 cut(s)	233, 380
MwoI	GCNNNNNNNGC	6 cut(s)	29, 105, 120, 215, 290, 334
NaeI	GCCGGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	303
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	146
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	199, 214, 424
NlaIV	GGNNCC	6 cut(s)	33, 130, 327, 417, 418, 515
NmuCI	GTSAC	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	40, 400
PkrI	GCNGC	5 cut(s)	81, 217, 292, 371, 448
PluTI	GGCGCC	1 cut(s)	35
PmaCI	CACGTG	1 cut(s)	165
PmlI	CACGTG	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	165
PpuMI	RGGWCCY	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	416
PspCI	CACGTG	1 cut(s)	165
PspN4I	GGNNCC	6 cut(s)	33, 130, 327, 417, 418, 515
PspPI	GGNCC	3 cut(s)	129, 273, 416
PspPPI	RGGWCCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	203, 239, 255
SatI	GCNGC	5 cut(s)	80, 216, 291, 370, 447
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	3 cut(s)	129, 273, 416
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	167, 179, 245, 438, 489, 519, 543
SfaNI	GCATC	2 cut(s)	147, 521
SfoI	GGCGCC	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	34
SinI	GGWCC	3 cut(s)	129, 273, 416
SmiMI	CAYNNNNRTG	1 cut(s)	529
Sse9I	AATT	2 cut(s)	140, 235
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	5 cut(s)	80, 108, 215, 290, 353
SspDI	GGCGCC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	5, 469
TaiI	ACGT	2 cut(s)	167, 179
TaqI	TCGA	1 cut(s)	489
TaqII	GACCGA	2 cut(s)	146, 290
TasI	AATT	2 cut(s)	140, 235
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	3 cut(s)	82, 218, 293
TfiI	GAWTC	2 cut(s)	40, 400
Tru1I	TTAA	3 cut(s)	203, 239, 255
Tru9I	TTAA	3 cut(s)	203, 239, 255
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	2 cut(s)	369, 446
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	3 cut(s)	37, 213, 349
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	129, 273, 416
XapI	RAATTY	1 cut(s)	235
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.