Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000467.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

70756 .. 77217

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atgaagccaccagagcattcgatcgacccaggaagcagcaatggtgttggacctaattgcgatgagctggttattgggtatgctgatgatgacccggatcttggttttggccaaggctttgtgaatgttggggtcggcatagtgaagaaggatgtggataaaccagtcgaccctttttgctatgatccctgcacatccagctttggagaggcgcagtacaaatcagaggctctggttgatccagatagagcattgagtgatgtgcggaatttggatagcataagcttctcagattggttcatgtccaagggtggcacacgcacgagtatccagagaatgtgggatcctgttgcatacgctcttgggttcattgactgtgacaacatcagtgctcgttgtatgctcactatattcacgttgtttgccactaagaccgaggcatccctgcttcgcatgctcaagggttctcctgatgtttacttgagtggacccatcagacagtatatcattgacaaggggggaaggtttcatcttaggtggggatgtagagagatattgtatgataaatctgctgatggggaaacttatgtcgcaggccttgcaatgtctaaggctactaataagcaaactgtgaaagcagatgcctatgttgcagcatgcgatgtgcctggaatcaagagattgcttccgtcccagtggagggaatgggattttttcaataatatctatgaactagttggagttcctgttgtcactgtacaacttagatacgatggctgggtcacagagatgcaggatcttgaacggtcaaggcaattgaagcaagctttgggattggataatcttctctatactcccgatgctgatttttcatgctttgctgatctagcacttacttctccagaagactactacattgaaggacaaggttcactcctgcaatgtgtgttgacaccaggtgatccttacatgcctctaccaaacgaagaaattatagcaaaagtcacgaaacaggttttggctttattcccatcatcccaaggcttagaagtcacttggtcatcagttgtcaaaattgggcaatctctatatcgtgaaggacctggtaaagatccatttagaccagatcagaagacaccagtgaaaaatttcttccttgcgggatcatacacaaaacaagactatatagatagcatggaaggagcaactttatctggcagacgagcttctgcctatatatgcaatgctggggaagagttggtagaattgcgaaagaaacttgcatcccaagaggggaatacaaaagctgctaatactactgatgagctgagtcttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016491 GO:0016627 GO:0016635 GO:0031967 GO:0031975 GO:0042214 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046246 GO:0052886 GO:0052889 GO:0055114 GO:0071704 GO:1901175 GO:1901177 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

446

Amino Acids

49.29

Weight (kDa)

4.75

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	52 - 413	1.1e-46	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	2 cut(s)	265, 1160
AclWI	GGATC	9 cut(s)	105, 179, 233, 338, 351, 804, 956, 1106, 1171
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	268, 1147
AdeI	CACNNNGTG	1 cut(s)	959
AfaI	GTAC	2 cut(s)	218, 759
AfiI	CCNNNNNNNGG	4 cut(s)	101, 699, 700, 1293
AgsI	TTSAA	4 cut(s)	718, 803, 820, 920
AhlI	ACTAGT	1 cut(s)	733
AjnI	CCWGG	4 cut(s)	28, 667, 955, 1102
AjuI	GAANNNNNNNTTGG	4 cut(s)	812, 844, 1001, 1033
AluBI	AGCT	7 cut(s)	67, 201, 285, 827, 1226, 1307, 1327
AluI	AGCT	7 cut(s)	67, 201, 285, 827, 1226, 1307, 1327
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	9 cut(s)	105, 179, 233, 338, 351, 804, 956, 1106, 1171
AoxI	GGCC	2 cut(s)	109, 595
ApeKI	GCWGC	3 cut(s)	36, 653, 1307
ApoI	RAATTY	2 cut(s)	268, 1147
Asp700I	GAANNNNTTC	1 cut(s)	1148
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	50, 488, 1100
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	971
AvaII	GGWCC	3 cut(s)	50, 488, 1100
BalI	TGGCCA	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	912, 1139
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	3 cut(s)	48, 665, 1294
BccI	CCATC	4 cut(s)	500, 569, 767, 1039
BciT130I	CCWGG	4 cut(s)	30, 669, 957, 1104
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	733
BfaI	CTAG	2 cut(s)	734, 887
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	3 cut(s)	37, 654, 1308
BlsI	GCNGC	3 cut(s)	38, 655, 1309
Bme1390I	CCNGG	5 cut(s)	30, 95, 669, 957, 1104
Bme18I	GGWCC	3 cut(s)	50, 488, 1100
BmgT120I	GGNCC	3 cut(s)	50, 488, 1100
BmiI	GGNNCC	2 cut(s)	345, 490
BmrFI	CCNGG	5 cut(s)	30, 95, 669, 957, 1104
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	5 cut(s)	449, 631, 780, 850, 1292
BmuI	ACTGGG	1 cut(s)	688
BpiI	GAAGAC	2 cut(s)	912, 1139
BpmI	CTGGAG	1 cut(s)	885
BpuEI	CTTGAG	2 cut(s)	443, 502
BpuMI	CCSGG	1 cut(s)	95
BsaJI	CCNNGG	5 cut(s)	28, 112, 306, 435, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 699, 700, 1293
Bse1I	ACTGG	3 cut(s)	164, 694, 1139
Bse3DI	GCAATG	4 cut(s)	46, 609, 947, 1249
BseBI	CCWGG	4 cut(s)	30, 669, 957, 1104
BseDI	CCNNGG	5 cut(s)	28, 112, 306, 435, 1039
BseGI	GGATG	6 cut(s)	157, 194, 440, 548, 1034, 1283
BseLI	CCNNNNNNNGG	4 cut(s)	101, 699, 700, 1293
BseMI	GCAATG	4 cut(s)	46, 609, 947, 1249
BseMII	CTCAG	2 cut(s)	303, 1319
BseNI	ACTGG	3 cut(s)	164, 694, 1139
BseXI	GCAGC	3 cut(s)	48, 665, 1294
BseYI	CCCAGC	2 cut(s)	777, 1247
BsgI	GTGCAG	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	111, 597
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	676
BslI	CCNNNNNNNGG	4 cut(s)	101, 699, 700, 1293
BsmFI	GGGAC	1 cut(s)	676
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	111, 597
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	757
BspACI	CCGC	2 cut(s)	265, 1160
BspANI	GGCC	2 cut(s)	111, 597
BspCNI	CTCAG	2 cut(s)	302, 1320
BspLI	GGNNCC	2 cut(s)	345, 490
BspPI	GGATC	9 cut(s)	105, 179, 233, 338, 351, 804, 956, 1106, 1171
BsrDI	GCAATG	4 cut(s)	46, 609, 947, 1249
BsrGI	TGTACA	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	164, 694, 1139
BssECI	CCNNGG	5 cut(s)	28, 112, 306, 435, 1039
BssSI	CACGAG	1 cut(s)	322
BssT1I	CCWWGG	3 cut(s)	112, 306, 1039
Bst2BI	CACGAG	1 cut(s)	322
Bst2UI	CCWGG	4 cut(s)	30, 669, 957, 1104
Bst4CI	ACNGT	5 cut(s)	377, 501, 631, 757, 807
Bst6I	CTCTTC	1 cut(s)	1248
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	757
BstC8I	GCNNGC	4 cut(s)	455, 595, 658, 825
BstDEI	CTNAG	7 cut(s)	289, 429, 533, 609, 764, 1045, 1328
BstF5I	GGATG	6 cut(s)	157, 194, 440, 548, 1034, 1283
BstHHI	GCGC	1 cut(s)	214
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 198, 454, 599, 650, 820, 887
BstNI	CCWGG	4 cut(s)	30, 669, 957, 1104
BstNSI	RCATGY	3 cut(s)	457, 660, 973
BstSCI	CCNGG	5 cut(s)	28, 93, 667, 955, 1102
BstV1I	GCAGC	3 cut(s)	48, 665, 1294
BstV2I	GAAGAC	2 cut(s)	912, 1139
BstX2I	RGATCY	4 cut(s)	97, 343, 796, 1111
BstYI	RGATCY	4 cut(s)	97, 343, 796, 1111
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	111, 597
BtgZI	GCGATG	2 cut(s)	75, 675
BtsCI	GGATG	6 cut(s)	157, 194, 440, 548, 1034, 1283
BtsIMutI	CAGTG	4 cut(s)	394, 701, 753, 1146
Cac8I	GCNNGC	4 cut(s)	455, 595, 658, 825
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	50, 488, 1100
CsiI	ACCWGGT	2 cut(s)	955, 1102
Csp6I	GTAC	2 cut(s)	217, 758
CviAII	CATG	6 cut(s)	301, 454, 657, 873, 970, 1195
CviQI	GTAC	2 cut(s)	217, 758
DdeI	CTNAG	7 cut(s)	289, 429, 533, 609, 764, 1045, 1328
DraIII	CACNNNGTG	1 cut(s)	959
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	1248
EarI	CTCTTC	1 cut(s)	1248
Eco130I	CCWWGG	3 cut(s)	112, 306, 1039
Eco147I	AGGCCT	1 cut(s)	597
Eco47I	GGWCC	3 cut(s)	50, 488, 1100
EcoO109I	RGGNCCY	1 cut(s)	1100
EcoRII	CCWGG	4 cut(s)	28, 667, 955, 1102
EcoT14I	CCWWGG	3 cut(s)	112, 306, 1039
ErhI	CCWWGG	3 cut(s)	112, 306, 1039
FaeI	CATG	6 cut(s)	304, 457, 660, 876, 973, 1198
FaqI	GGGAC	1 cut(s)	676
FatI	CATG	6 cut(s)	300, 453, 656, 872, 969, 1194
FauI	CCCGC	1 cut(s)	1153
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	37, 654, 1308
FokI	GGATG	6 cut(s)	164, 181, 427, 555, 1021, 1270
Fsp4HI	GCNGC	3 cut(s)	37, 654, 1308
FspBI	CTAG	2 cut(s)	734, 887
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	3 cut(s)	37, 654, 1308
GsaI	CCCAGC	2 cut(s)	781, 1251
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	2 cut(s)	111, 597
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	6 cut(s)	304, 457, 660, 876, 973, 1198
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	2 cut(s)	169, 951
HindII	GTYRAC	2 cut(s)	169, 951
HindIII	AAGCTT	2 cut(s)	283, 825
HinfI	GANTC	2 cut(s)	672, 1330
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	5 cut(s)	169, 478, 488, 932, 951
Hpy188I	TCNGA	5 cut(s)	226, 292, 497, 1131, 1340
Hpy188III	TCNNGA	9 cut(s)	242, 331, 470, 676, 800, 857, 902, 1006, 1094
Hpy8I	GTNNAC	5 cut(s)	169, 478, 488, 932, 951
HpyAV	CCTTC	5 cut(s)	142, 516, 914, 1091, 1193
HpyCH4III	ACNGT	5 cut(s)	377, 501, 631, 757, 807
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	8 cut(s)	192, 353, 602, 653, 793, 940, 1242, 1283
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 198, 454, 599, 650, 820, 887
HpyF3I	CTNAG	7 cut(s)	289, 429, 533, 609, 764, 1045, 1328
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	6 cut(s)	304, 457, 660, 876, 973, 1198
HspAI	GCGC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	1202
Lsp1109I	GCAGC	3 cut(s)	48, 665, 1294
LweI	GCATC	5 cut(s)	449, 631, 780, 850, 1292
MabI	ACCWGGT	2 cut(s)	955, 1102
MaeI	CTAG	2 cut(s)	734, 887
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	5 cut(s)	377, 751, 781, 1003, 1051
MboII	GAAGA	7 cut(s)	157, 836, 917, 998, 1144, 1144, 1265
MfeI	CAATTG	1 cut(s)	815
MflI	RGATCY	4 cut(s)	97, 343, 796, 1111
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	7 cut(s)	55, 268, 815, 990, 1074, 1147, 1265
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	1339
MmeI	TCCRAC	2 cut(s)	28, 718
MnlI	CCTC	6 cut(s)	202, 220, 430, 693, 984, 1285
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	1148
MscI	TGGCCA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	788
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	5 cut(s)	30, 95, 669, 957, 1104
MunI	CAATTG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	4 cut(s)	30, 669, 957, 1104
MwoI	GCNNNNNNNGC	7 cut(s)	13, 198, 454, 599, 650, 820, 887
NciI	CCSGG	1 cut(s)	95
NlaIII	CATG	6 cut(s)	304, 457, 660, 876, 973, 1198
NlaIV	GGNNCC	2 cut(s)	345, 490
NmuCI	GTSAC	5 cut(s)	377, 751, 781, 1003, 1051
NspI	RCATGY	3 cut(s)	457, 660, 973
PaeI	GCATGC	2 cut(s)	457, 660
PceI	AGGCCT	1 cut(s)	597
PctI	GAATGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	1148
PfeI	GAWTC	1 cut(s)	672
PkrI	GCNGC	3 cut(s)	38, 655, 1309
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	1 cut(s)	1338
PpsI	GAGTC	1 cut(s)	1338
PpuMI	RGGWCCY	1 cut(s)	1100
Psp5II	RGGWCCY	1 cut(s)	1100
Psp6I	CCWGG	4 cut(s)	28, 667, 955, 1102
PspFI	CCCAGC	2 cut(s)	777, 1247
PspGI	CCWGG	4 cut(s)	28, 667, 955, 1102
PspN4I	GGNNCC	2 cut(s)	345, 490
PspPI	GGNCC	3 cut(s)	50, 488, 1100
PspPPI	RGGWCCY	1 cut(s)	1100
PsuI	RGATCY	4 cut(s)	97, 343, 796, 1111
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	2 cut(s)	218, 759
RsaNI	GTAC	2 cut(s)	217, 758
RseI	CAYNNNNRTG	1 cut(s)	788
SalI	GTCGAC	1 cut(s)	167
SatI	GCNGC	3 cut(s)	37, 654, 1308
Sau96I	GGNCC	3 cut(s)	50, 488, 1100
SchI	GAGTC	1 cut(s)	1339
ScrFI	CCNGG	5 cut(s)	30, 95, 669, 957, 1104
SduI	GDGCHC	1 cut(s)	394
SexAI	ACCWGGT	2 cut(s)	955, 1102
SfaNI	GCATC	5 cut(s)	449, 631, 780, 850, 1292
SinI	GGWCC	3 cut(s)	50, 488, 1100
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	458, 481
SmoI	CTYRAG	2 cut(s)	458, 481
SpeI	ACTAGT	1 cut(s)	733
SphI	GCATGC	2 cut(s)	457, 660
Sse9I	AATT	7 cut(s)	55, 268, 815, 990, 1074, 1147, 1265
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	2 cut(s)	265, 1160
SspMI	CTAG	2 cut(s)	734, 887
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	5 cut(s)	28, 93, 667, 955, 1102
StyI	CCWWGG	3 cut(s)	112, 306, 1039
TaaI	ACNGT	5 cut(s)	377, 501, 631, 757, 807
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	20, 24, 168
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	7 cut(s)	55, 268, 815, 990, 1074, 1147, 1265
TatI	WGTACW	2 cut(s)	216, 757
TfiI	GAWTC	1 cut(s)	672
TscAI	CASTG	4 cut(s)	394, 701, 760, 1146
TseFI	GTSAC	5 cut(s)	377, 751, 781, 1003, 1051
TseI	GCWGC	3 cut(s)	36, 653, 1307
Tsp45I	GTSAC	5 cut(s)	377, 751, 781, 1003, 1051
TspDTI	ATGAA	6 cut(s)	17, 289, 358, 518, 744, 861
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	4 cut(s)	394, 701, 760, 1146
VpaK11BI	GGWCC	3 cut(s)	50, 488, 1100
XapI	RAATTY	2 cut(s)	268, 1147
XceI	RCATGY	3 cut(s)	457, 660, 973
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	1148
XspI	CTAG	2 cut(s)	734, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.