Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000472.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60663 .. 64638

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggctccagctaaaggtgatgtttccaaaaagggtgacccaaagtcacaagccttgaaggctgccaaagcattgaagtccggacctactgttaagagaacagggaagaagatccgaacatcagttacgtttcatcggcctaagacattgaaaaaggagaggaaccctaagtaccctcgtattagtgctccaccaaggaacaagcttgatcattatcaaattttgaagtatcctcttacgactgaatctgcaatgaaaaagattgaagataacaacactttggtatttattgttgacatacgtgctgacaagaagaaaataaaggatgcagtcaagaaaatgtatgacattcagaccaagaaagtgaataccttgatcaggcctgatggtactaaaaaggcttatgttaggttgaccccagattttgatgcactggatgtggcaaacaaaattgagtatttggtatatgttgttactgacatgacgggggcagtggaggaggaggatgctgaggttgtggcggtggaggaggggcgaaccagttttccagttggttgctccgaaagaggaaagctgctgagaggagaagaaggaaatcggttttggcggagaacaagacatgggtgtctttgggtgcccagagcagttttctgggtgcagaaagatttgaattttttttttgttaatcgtgtcaccgaactttcattttgggtccgtctactgggagttgaatgcgaagaacatggatttgtagcaggaattggagaggatgatggcagcgttggtgatggtttgggcggaggggaaggagatgagagagaggaggaggagagagaagaagaagatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

283

Amino Acids

32.02

Weight (kDa)

8.74

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L23eN	PF03939	14 - 64	1.1e-19	Ribosomal protein L23, N-terminal domain
Ribosomal_L23	PF00276	73 - 134	3.1e-13	Ribosomal protein L23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	718
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	3 cut(s)	521, 607, 798
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	219, 670
AfaI	GTAC	2 cut(s)	173, 391
AfiI	CCNNNNNNNGG	3 cut(s)	14, 378, 721
AgsI	TTSAA	7 cut(s)	58, 76, 151, 226, 266, 670, 731
AhdI	GACNNNNNGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
AluBI	AGCT	3 cut(s)	11, 205, 574
AluI	AGCT	3 cut(s)	11, 205, 574
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	2 cut(s)	137, 380
ApeKI	GCWGC	3 cut(s)	62, 574, 777
ApoI	RAATTY	2 cut(s)	219, 670
AspS9I	GGNCC	2 cut(s)	83, 712
AsuHPI	GGTGA	4 cut(s)	29, 47, 685, 797
AvaII	GGWCC	2 cut(s)	83, 712
BaeGI	GKGCMC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	190
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	3 cut(s)	49, 561, 789
BccI	CCATC	3 cut(s)	380, 767, 782
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	2 cut(s)	208, 375
BfuI	GTATCC	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	63, 575, 778
BlsI	GCNGC	3 cut(s)	64, 576, 779
Bme18I	GGWCC	2 cut(s)	83, 712
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	83, 712
BmiI	GGNNCC	4 cut(s)	6, 164, 636, 713
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	3 cut(s)	316, 418, 496
BmuI	ACTGGG	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 378, 721
Bse1I	ACTGG	4 cut(s)	438, 540, 548, 726
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	4 cut(s)	331, 442, 511, 775
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	14, 378, 721
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	501, 569
BseNI	ACTGG	4 cut(s)	438, 540, 548, 726
BseRI	GAGGAG	7 cut(s)	512, 515, 542, 597, 836, 839, 842
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	3 cut(s)	49, 561, 789
BsgI	GTGCAG	1 cut(s)	677
BshFI	GGCC	2 cut(s)	139, 382
BshNI	GGYRCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	14, 378, 721
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	139, 382
Bsp1286I	GDGCHC	2 cut(s)	190, 639
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	111, 208, 375
BspACI	CCGC	3 cut(s)	521, 607, 798
BspANI	GGCC	2 cut(s)	139, 382
BspCNI	CTCAG	2 cut(s)	502, 570
BspEI	TCCGGA	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	6, 164, 636, 713
BspPI	GGATC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	438, 540, 548, 726
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	111, 208, 375
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	4 cut(s)	141, 168, 510, 578
BstEII	GGTNACC	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	331, 442, 511, 775
BstKTI	GATC	3 cut(s)	114, 211, 378
BstMBI	GATC	3 cut(s)	111, 208, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstPI	GGTNACC	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	49, 561, 789
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	139, 382
BtsCI	GGATG	4 cut(s)	331, 442, 511, 775
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	431, 498
Cfr13I	GGNCC	2 cut(s)	83, 712
Csp6I	GTAC	2 cut(s)	172, 390
CviAII	CATG	3 cut(s)	481, 620, 743
CviJI	RGCY	9 cut(s)	5, 11, 53, 62, 139, 205, 382, 401, 574
CviKI_1	RGCY	9 cut(s)	5, 11, 53, 62, 139, 205, 382, 401, 574
CviQI	GTAC	2 cut(s)	172, 390
DdeI	CTNAG	4 cut(s)	141, 168, 510, 578
DpnI	GATC	3 cut(s)	113, 210, 377
DpnII	GATC	3 cut(s)	111, 208, 375
DrdI	GACNNNNNNGTC	1 cut(s)	624
DriI	GACNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	624
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EciI	GGCGGA	2 cut(s)	622, 813
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	83, 712
Eco91I	GGTNACC	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	3 cut(s)	484, 623, 746
FaiI	YATR	8 cut(s)	299, 345, 405, 466, 468, 482, 621, 744
FatI	CATG	3 cut(s)	480, 619, 742
FbaI	TGATCA	2 cut(s)	208, 375
FblI	GTMKAC	1 cut(s)	718
Fnu4HI	GCNGC	3 cut(s)	63, 575, 778
FokI	GGATG	4 cut(s)	338, 449, 518, 782
Fsp4HI	GCNGC	3 cut(s)	63, 575, 778
GluI	GCNGC	3 cut(s)	63, 575, 778
HaeIII	GGCC	2 cut(s)	139, 382
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	484, 623, 746
HincII	GTYRAC	2 cut(s)	295, 414
HindII	GTYRAC	2 cut(s)	295, 414
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	4 cut(s)	29, 47, 685, 797
Hpy166II	GTNNAC	3 cut(s)	295, 414, 719
Hpy188I	TCNGA	3 cut(s)	116, 354, 562
Hpy188III	TCNNGA	2 cut(s)	81, 334
Hpy8I	GTNNAC	3 cut(s)	295, 414, 719
HpyAV	CCTTC	3 cut(s)	52, 584, 800
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	128, 301
HpyCH4V	TGCA	4 cut(s)	251, 329, 431, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	4 cut(s)	141, 168, 510, 578
HpySE526I	ACGT	2 cut(s)	128, 301
Hsp92II	CATG	3 cut(s)	484, 623, 746
Kpn2I	TCCGGA	1 cut(s)	80
Ksp22I	TGATCA	2 cut(s)	208, 375
Kzo9I	GATC	3 cut(s)	111, 208, 375
LmnI	GCTCC	3 cut(s)	10, 193, 563
Lsp1109I	GCAGC	3 cut(s)	49, 561, 789
LweI	GCATC	3 cut(s)	316, 418, 496
MaeII	ACGT	2 cut(s)	128, 301
MaeIII	GTNAC	5 cut(s)	35, 45, 124, 472, 691
MalI	GATC	3 cut(s)	113, 210, 377
MboI	GATC	3 cut(s)	111, 208, 375
MboII	GAAGA	8 cut(s)	118, 121, 278, 325, 599, 749, 848, 851
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	190, 639
MluCI	AATT	4 cut(s)	219, 450, 670, 759
MroI	TCCGGA	1 cut(s)	80
MseI	TTAA	2 cut(s)	93, 684
MspI	CCGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	737
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	3 cut(s)	111, 208, 375
NlaIII	CATG	3 cut(s)	484, 623, 746
NlaIV	GGNNCC	4 cut(s)	6, 164, 636, 713
NmuCI	GTSAC	3 cut(s)	35, 45, 691
PceI	AGGCCT	1 cut(s)	382
PctI	GAATGC	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	64, 576, 779
Ppu21I	YACGTR	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	6, 164, 636, 713
PspPI	GGNCC	2 cut(s)	83, 712
PsrI	GAACNNNNNNTAC	4 cut(s)	109, 141, 155, 187
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	173, 391
RsaNI	GTAC	2 cut(s)	172, 390
SaqAI	TTAA	2 cut(s)	93, 684
SatI	GCNGC	3 cut(s)	63, 575, 778
Sau3AI	GATC	3 cut(s)	111, 208, 375
Sau96I	GGNCC	2 cut(s)	83, 712
SduI	GDGCHC	2 cut(s)	190, 639
SfaNI	GCATC	3 cut(s)	316, 418, 496
SinI	GGWCC	2 cut(s)	83, 712
Sse9I	AATT	4 cut(s)	219, 450, 670, 759
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	3 cut(s)	521, 607, 798
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	2 cut(s)	131, 304
TasI	AATT	4 cut(s)	219, 450, 670, 759
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	93, 684
Tru9I	TTAA	2 cut(s)	93, 684
TscAI	CASTG	2 cut(s)	438, 498
TseFI	GTSAC	3 cut(s)	35, 45, 691
TseI	GCWGC	3 cut(s)	62, 574, 777
Tsp45I	GTSAC	3 cut(s)	35, 45, 691
TspDTI	ATGAA	3 cut(s)	122, 269, 693
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	2 cut(s)	438, 498
VpaK11BI	GGWCC	2 cut(s)	83, 712
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	2 cut(s)	219, 670
XmiI	GTMKAC	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.