Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000480.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

352684 .. 355861

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggaatcaggcgtatcccttgtcaaatccgaagagaaactcggggtttatggaggcagaggccggagcggtgggagaaaagccttccgggtactggatctgaacggaattcaaggtatcgacgaggagggttgggcgagaagaggaagagctggaggcgatgtagaaagacatcatcgttctcctccaatggcggtggcagtgcgaggaagcagagcaggatctgatttcggcatgtttatcctccagagcttcttctcgtattggatcttcgggtgcttagactggtacaaatccctcttcttcttcttcaatgaaccgaaccgaaccggatttttcggtgcgggtcggtgcggttttccccgttctacggttctaagtcccagccctacccttacggaagccaagtatgttgctggtgagaacatcaaacacattgttctcgagaatgtcaacactgcctctcttaaagttcgatcaaagcaagagaatgttgctggtgtaaagctcctaaaatttgaatactttcctgaaggtgagaccaagaacgacctcactagattggccagaggtggacaacaggttcaactgtgcgaggctgcttatgtgaaagcaattgaggttcttgtggagcttgcttcacttcaaacatcatttttaacccttgatgaagctattgaggaaaagaatctcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

232

Amino Acids

25.71

Weight (kDa)

8.73

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	131 - 228	6e-19	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	4 cut(s)	69, 194, 344, 354
AclWI	GGATC	3 cut(s)	105, 229, 275
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	108, 515
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	2 cut(s)	93, 290
AfiI	CCNNNNNNNGG	2 cut(s)	94, 370
AgsI	TTSAA	5 cut(s)	113, 313, 521, 587, 647
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	5 cut(s)	152, 252, 508, 634, 674
AluI	AGCT	5 cut(s)	152, 252, 508, 634, 674
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	3 cut(s)	105, 229, 275
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	2 cut(s)	41, 443
AoxI	GGCC	2 cut(s)	61, 564
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	108, 515
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	431, 548
AvaI	CYCGRG	2 cut(s)	41, 443
BalI	TGGCCA	1 cut(s)	566
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbvI	GCAGC	1 cut(s)	586
BciVI	GTATCC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
Bme1390I	CCNGG	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	41, 443
BmrFI	CCNGG	1 cut(s)	89
BpmI	CTGGAG	2 cut(s)	174, 230
BpuMI	CCSGG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	533
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 370
Bse1I	ACTGG	2 cut(s)	99, 290
BseLI	CCNNNNNNNGG	2 cut(s)	94, 370
BseNI	ACTGG	2 cut(s)	99, 290
BseRI	GAGGAG	2 cut(s)	140, 174
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	2 cut(s)	63, 566
BsiHKCI	CYCGRG	2 cut(s)	41, 443
BsiSI	CCGG	3 cut(s)	64, 88, 330
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	94, 370
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	63, 566
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	2 cut(s)	41, 443
Bsp143I	GATC	4 cut(s)	97, 221, 267, 476
BspACI	CCGC	4 cut(s)	69, 194, 344, 354
BspANI	GGCC	2 cut(s)	63, 566
BspPI	GGATC	3 cut(s)	105, 229, 275
BspQI	GCTCTTC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	99, 290
BssMI	GATC	4 cut(s)	97, 221, 267, 476
Bst4CI	ACNGT	2 cut(s)	373, 591
Bst6I	CTCTTC	4 cut(s)	27, 136, 142, 305
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	2 cut(s)	280, 377
BstKTI	GATC	4 cut(s)	100, 224, 270, 479
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	97, 221, 267, 476
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	586
BstX2I	RGATCY	3 cut(s)	97, 221, 267
BstYI	RGATCY	3 cut(s)	97, 221, 267
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	63, 566
BtgZI	GCGATG	1 cut(s)	174
BtsI	GCAGTG	2 cut(s)	207, 456
BtsIMutI	CAGTG	2 cut(s)	207, 456
Cac8I	GCNNGC	1 cut(s)	636
CaiI	CAGNNNCTG	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	92, 289
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	1 cut(s)	235
CviQI	GTAC	2 cut(s)	92, 289
DdeI	CTNAG	2 cut(s)	280, 377
DpnI	GATC	4 cut(s)	99, 223, 269, 478
DpnII	GATC	4 cut(s)	97, 221, 267, 476
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	4 cut(s)	27, 136, 142, 305
EarI	CTCTTC	4 cut(s)	27, 136, 142, 305
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	552
Eco88I	CYCGRG	2 cut(s)	41, 443
EcoRI	GAATTC	1 cut(s)	108
FaeI	CATG	1 cut(s)	238
FaiI	YATR	6 cut(s)	51, 236, 411, 606, 695, 697
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	1 cut(s)	234
FauI	CCCGC	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	695
Fnu4HI	GCNGC	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	1 cut(s)	600
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	2 cut(s)	174, 230
HaeIII	GGCC	2 cut(s)	63, 566
HapII	CCGG	3 cut(s)	64, 88, 330
Hin1II	CATG	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	5, 688
HpaII	CCGG	3 cut(s)	64, 88, 330
HphI	GGTGA	2 cut(s)	431, 548
Hpy166II	GTNNAC	2 cut(s)	454, 575
Hpy188I	TCNGA	3 cut(s)	31, 102, 226
Hpy188III	TCNNGA	4 cut(s)	247, 443, 445, 530
Hpy8I	GTNNAC	2 cut(s)	454, 575
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	94, 527
HpyCH4III	ACNGT	2 cut(s)	373, 591
HpyF3I	CTNAG	2 cut(s)	280, 377
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	97, 221, 267, 476
LguI	GCTCTTC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	66, 513, 631
Lsp1109I	GCAGC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	558
MalI	GATC	4 cut(s)	99, 223, 269, 478
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	4 cut(s)	97, 221, 267, 476
MboII	GAAGA	9 cut(s)	44, 153, 159, 247, 262, 292, 295, 298, 301
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	3 cut(s)	97, 221, 267
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	3 cut(s)	108, 515, 615
MluNI	TGGCCA	1 cut(s)	566
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	2 cut(s)	468, 659
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	3 cut(s)	64, 88, 330
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	615
NciI	CCSGG	1 cut(s)	89
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	4 cut(s)	97, 221, 267, 476
NlaIII	CATG	1 cut(s)	238
NspI	RCATGY	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	5, 688
PkrI	GCNGC	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	3 cut(s)	97, 221, 267
RsaI	GTAC	2 cut(s)	93, 290
RsaNI	GTAC	2 cut(s)	92, 289
SapI	GCTCTTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	468, 659
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	4 cut(s)	97, 221, 267, 476
ScrFI	CCNGG	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	108, 515, 615
SsiI	CCGC	4 cut(s)	69, 194, 344, 354
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	373, 591
TaqI	TCGA	3 cut(s)	120, 444, 475
TasI	AATT	3 cut(s)	108, 515, 615
TfiI	GAWTC	2 cut(s)	5, 688
Tru1I	TTAA	2 cut(s)	468, 659
Tru9I	TTAA	2 cut(s)	468, 659
TscAI	CASTG	2 cut(s)	207, 463
TseI	GCWGC	1 cut(s)	599
TspDTI	ATGAA	2 cut(s)	330, 684
TspGWI	ACGGA	2 cut(s)	120, 413
TspRI	CASTG	2 cut(s)	207, 463
XapI	RAATTY	2 cut(s)	108, 515
XceI	RCATGY	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.