Rmu_ssc0000484.1_g000008

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000484.1
N/A
Physical Location & Seq
Forward (+)
27738 .. 28906
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
atgctcctatcagatggtaagatttctagcagtgacagtgaattgtggttgttttatcctcttcaacggttctgcagtctagagctctataagctgggcggaagatctcatttgtcagtgcatgtcaagaagcacacagtctcacgaccaattttttttttctctcccacaaatccaaatggcctctacctcctccactacctcctccactgtatcctccaccattgctcccatatcctccacccccgccccttccgtatcaagcttgatcgctctaactatgtcctctggcgcacaaccttcagggctcgtatatacaatgaaactaacttggagagtactttggctcaaacaaggcaatcaaactgcccaaggaccgctggctcaggggacaacaacttggctccacttgatcttcaatctccaacagcgttcgacaacaactactacaagaaccttatccagaacagaggtctcctccactccgatcagcagttgttcttgaatggtggctccaccgattccatagtgcgtggctacagcaacagccagagcacattcacttctgactttgcggccgcaatgatcaagatgggagacattaacccgctcacaggatccaatggagagattaggaagaactgcaggaagcccaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

219

Amino Acids

24.93

Weight (kDa)

9.48

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 100 - 182 5.2e-15 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 610
AciI CCGC 6 cut(s) 99, 247, 378, 575, 579, 608
AclWI GGATC 2 cut(s) 612, 625
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 614
AgsI TTSAA 3 cut(s) 65, 419, 505
AluBI AGCT 3 cut(s) 85, 94, 265
AluI AGCT 3 cut(s) 85, 94, 265
Alw21I GWGCWC 2 cut(s) 87, 557
Alw26I GTCTC 3 cut(s) 145, 479, 591
AlwI GGATC 2 cut(s) 612, 625
AoxI GGCC 2 cut(s) 181, 576
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 375
AvaII GGWCC 1 cut(s) 375
BamHI GGATCC 1 cut(s) 617
BanII GRGCYC 2 cut(s) 87, 310
Bbv12I GWGCWC 2 cut(s) 87, 557
BccI CCATC 2 cut(s) 8, 586
BciVI GTATCC 1 cut(s) 224
BclI TGATCA 1 cut(s) 585
BcoDI GTCTC 3 cut(s) 145, 479, 591
BfaI CTAG 2 cut(s) 27, 80
BfmI CTRYAG 3 cut(s) 73, 538, 643
BfuI GTATCC 1 cut(s) 224
BglII AGATCT 1 cut(s) 104
BisI GCNGC 2 cut(s) 576, 579
BlsI GCNGC 2 cut(s) 577, 580
BmcAI AGTACT 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 3 cut(s) 405, 514, 619
BplI GAGNNNNNCTC 2 cut(s) 462, 494
Bpu10I CCTNAGC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse3DI GCAATG 2 cut(s) 223, 588
BseDI CCNNGG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMI GCAATG 2 cut(s) 223, 588
BseMII CTCAG 1 cut(s) 399
BseRI GAGGAG 3 cut(s) 182, 194, 467
BseX3I CGGCCG 1 cut(s) 576
BseYI CCCAGC 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 2 cut(s) 183, 578
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 87, 557
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 3 cut(s) 145, 479, 591
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 2 cut(s) 183, 578
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 87, 310, 557
Bsp143I GATC 6 cut(s) 104, 268, 412, 487, 585, 617
BspACI CCGC 6 cut(s) 99, 247, 378, 575, 579, 608
BspANI GGCC 2 cut(s) 183, 578
BspCNI CTCAG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 405, 514, 619
BspMAI CTGCAG 2 cut(s) 77, 647
BspPI GGATC 2 cut(s) 612, 625
BspTNI GGTCTC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 610
BsrDI GCAATG 2 cut(s) 223, 588
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 6 cut(s) 104, 268, 412, 487, 585, 617
BssT1I CCWWGG 1 cut(s) 371
Bst4CI ACNGT 4 cut(s) 38, 69, 139, 212
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 6 cut(s) 107, 271, 415, 490, 588, 620
BstMAI GTCTC 3 cut(s) 145, 479, 591
BstMBI GATC 6 cut(s) 104, 268, 412, 487, 585, 617
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 3 cut(s) 73, 538, 643
BstX2I RGATCY 2 cut(s) 104, 617
BstYI RGATCY 2 cut(s) 104, 617
BstZI CGGCCG 1 cut(s) 576
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 183, 578
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 4 cut(s) 37, 43, 123, 208
Cac8I GCNNGC 1 cut(s) 382
CciNI GCGGCCGC 1 cut(s) 576
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 122
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 385
DpnI GATC 6 cut(s) 106, 270, 414, 489, 587, 619
DpnII GATC 6 cut(s) 104, 268, 412, 487, 585, 617
EaeI YGGCCR 1 cut(s) 576
EagI CGGCCG 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 87, 310
Eco31I GGTCTC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 375
Eco52I CGGCCG 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 2 cut(s) 87, 310
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 1 cut(s) 125
FaiI YATR 7 cut(s) 90, 123, 234, 282, 314, 316, 527
FaqI GGGAC 1 cut(s) 404
FatI CATG 1 cut(s) 121
FauI CCCGC 2 cut(s) 254, 615
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 2 cut(s) 576, 579
FriOI GRGCYC 2 cut(s) 87, 310
Fsp4HI GCNGC 2 cut(s) 576, 579
FspBI CTAG 2 cut(s) 27, 80
GlaI GCGC 1 cut(s) 293
GluI GCNGC 2 cut(s) 576, 579
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 183, 578
HhaI GCGC 1 cut(s) 294
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 521
Hpy188I TCNGA 3 cut(s) 13, 487, 568
Hpy188III TCNNGA 6 cut(s) 80, 127, 144, 463, 502, 589
HpyAV CCTTC 2 cut(s) 262, 310
HpyCH4III ACNGT 4 cut(s) 38, 69, 139, 212
HpyCH4V TGCA 3 cut(s) 75, 121, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 385
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 6 cut(s) 104, 268, 412, 487, 585, 617
LmnI GCTCC 4 cut(s) 9, 233, 409, 518
LpnPI CCDG 9 cut(s) 80, 274, 289, 366, 372, 476, 563, 600, 631
MaeI CTAG 2 cut(s) 27, 80
MaeIII GTNAC 1 cut(s) 32
MalI GATC 6 cut(s) 106, 270, 414, 489, 587, 619
MbiI CCGCTC 1 cut(s) 610
MboI GATC 6 cut(s) 104, 268, 412, 487, 585, 617
MboII GAAGA 4 cut(s) 53, 114, 407, 649
MflI RGATCY 2 cut(s) 104, 617
MhlI GDGCHC 3 cut(s) 87, 310, 557
MluCI AATT 3 cut(s) 41, 150, 655
MmeI TCCRAC 1 cut(s) 449
MseI TTAA 2 cut(s) 603, 658
MspA1I CMGCKG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 6 cut(s) 104, 268, 412, 487, 585, 617
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 3 cut(s) 405, 514, 619
NmuCI GTSAC 1 cut(s) 32
NotI GCGGCCGC 1 cut(s) 576
NspI RCATGY 1 cut(s) 125
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 2 cut(s) 577, 580
Psp124BI GAGCTC 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 405, 514, 619
PspPI GGNCC 1 cut(s) 375
PstI CTGCAG 2 cut(s) 77, 647
PsuI RGATCY 2 cut(s) 104, 617
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 603, 658
SatI GCNGC 2 cut(s) 576, 579
Sau3AI GATC 6 cut(s) 104, 268, 412, 487, 585, 617
Sau96I GGNCC 1 cut(s) 375
ScaI AGTACT 1 cut(s) 340
SduI GDGCHC 3 cut(s) 87, 310, 557
SetI ASST 8 cut(s) 87, 96, 192, 204, 267, 302, 459, 475
SfcI CTRYAG 3 cut(s) 73, 538, 643
SinI GGWCC 1 cut(s) 375
Sse9I AATT 3 cut(s) 41, 150, 655
SsiI CCGC 6 cut(s) 99, 247, 378, 575, 579, 608
SspMI CTAG 2 cut(s) 27, 80
SstI GAGCTC 1 cut(s) 87
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 4 cut(s) 38, 69, 139, 212
TaqI TCGA 1 cut(s) 435
TasI AATT 3 cut(s) 41, 150, 655
TatI WGTACW 1 cut(s) 338
TauI GCSGC 2 cut(s) 578, 581
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 603, 658
Tru9I TTAA 2 cut(s) 603, 658
TscAI CASTG 4 cut(s) 37, 43, 123, 215
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 4 cut(s) 37, 43, 123, 215
VpaK11BI GGWCC 1 cut(s) 375
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 125
XspI CTAG 2 cut(s) 27, 80
ZrmI AGTACT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.