Rmu_ssc0000487.1_g000001

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000487.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 729
728 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 338 bp
atgaagctcgctcacgtttgctctctacatggagtgcccaaactgccctattcctccttcgcagctggcaacggcaaagtcgttgcctttaattcaagaccattctcaggtcatcggaacaaagtagctgccggtggcattggcgtatcagcaatgagcaatgcctactgcactggattctgcagctttcatcatgaagcagtggaaatgctgtctttgagaaacatgtgtggaaaaatattttttagggccttttcgacgtgcgcctcaccgatgatctctacgaattttgctctggtgatgcgttccccatcgtcacttgcgttggctacccgggg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
YqaJ

Protein Analysis

113

Amino Acids

11.98

Weight (kDa)

9.98

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 1 cut(s) 96
AjiI CACGTC 1 cut(s) 261
AluBI AGCT 4 cut(s) 7, 65, 128, 186
AluI AGCT 4 cut(s) 7, 65, 128, 186
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 62, 128, 183
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 2 cut(s) 334, 335
AsuHPI GGTGA 2 cut(s) 261, 310
AvaI CYCGRG 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 74, 115, 195
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 88
BcnI CCSGG 2 cut(s) 334, 335
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 3 cut(s) 63, 129, 184
BlsI GCNGC 3 cut(s) 64, 130, 185
Bme1390I CCNGG 2 cut(s) 334, 335
BmeT110I CYCGRG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 334, 335
BmsI GCATC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 334, 335
BsaJI CCNNGG 2 cut(s) 333, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 159, 166
BseDI CCNNGG 2 cut(s) 333, 334
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 2 cut(s) 159, 166
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 3 cut(s) 74, 115, 195
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 2 cut(s) 132, 334
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 159, 166
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 333, 334
BssMI GATC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 9, 67
BstDEI CTNAG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 332, 333
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 74, 115, 195
BsuRI GGCC 1 cut(s) 251
BtrI CACGTC 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 171, 207
Cac8I GCNNGC 2 cut(s) 9, 67
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 249
Cfr9I CCCGGG 1 cut(s) 333
CviAII CATG 3 cut(s) 29, 194, 226
CviJI RGCY 6 cut(s) 7, 65, 128, 186, 251, 329
CviKI_1 RGCY 6 cut(s) 7, 65, 128, 186, 251, 329
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 249
FaeI CATG 3 cut(s) 32, 197, 229
FaiI YATR 3 cut(s) 30, 195, 227
FatI CATG 3 cut(s) 28, 193, 225
Fnu4HI GCNGC 3 cut(s) 63, 129, 184
Fsp4HI GCNGC 3 cut(s) 63, 129, 184
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 63, 129, 184
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 132, 334
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 32, 197, 229
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 177
HpaII CCGG 2 cut(s) 132, 334
HphI GGTGA 2 cut(s) 261, 310
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 96, 194
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 15, 260
HpyCH4V TGCA 2 cut(s) 171, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 2 cut(s) 15, 260
Hsp92II CATG 3 cut(s) 32, 197, 229
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 5 cut(s) 51, 93, 145, 159, 281
Lsp1109I GCAGC 3 cut(s) 74, 115, 195
LweI GCATC 1 cut(s) 291
MaeII ACGT 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 315
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 91, 286
MnlI CCTC 2 cut(s) 64, 277
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 132, 334
MspR9I CCNGG 2 cut(s) 334, 335
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 334, 335
NdeII GATC 1 cut(s) 276
NlaIII CATG 3 cut(s) 32, 197, 229
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 1 cut(s) 229
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 225
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 320
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 3 cut(s) 64, 130, 185
PscI ACATGT 1 cut(s) 225
PspPI GGNCC 1 cut(s) 249
PstI CTGCAG 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 63, 129, 184
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 334, 335
SduI GDGCHC 1 cut(s) 39
SetI ASST 7 cut(s) 9, 18, 67, 112, 130, 188, 263
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 181
SmaI CCCGGG 1 cut(s) 335
Sse9I AATT 2 cut(s) 91, 286
SspI AATATT 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 332, 333
TaiI ACGT 2 cut(s) 18, 263
TaqI TCGA 1 cut(s) 257
TasI AATT 2 cut(s) 91, 286
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 178, 207
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 3 cut(s) 62, 128, 183
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 3 cut(s) 17, 179, 210
TspMI CCCGGG 1 cut(s) 333
TspRI CASTG 2 cut(s) 178, 207
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 229
XmaI CCCGGG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.