Rroxscaffold_1G00001080

Receptor-like protein 12

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
1479663 .. 1509647
29985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001080.1

Sequence Viewer

Length: 483 bp
ATGGTGGAACTCGGAAGGATTTTCTTTCTTTGGAAAGATGTGTACAGCGAGAGTTGGCTAAGTGTTGAAAGAATATTGGATGACCAAGAAGATGTGTACAGCGAGAGTTGGCTAAGTGTTGAAAGAATATTGGATGACCAAGGTAATCTTGGCAAACTTACTATTCCCCAAGGTGCCATTAATATAGGTATCAAACTTGGTATCACCTCGATAACAAACTCCACTACCCTCCTTAGAGCAAGTCTTATTAAGAGACTTCTTCTAGGTGGTAATAATCTCAATGGTACAATGGAGTCCCTCAAATTTCTTAAGCTACCAAATTTAAAGTGGCTAGATCTATCCGGTAACAACTTGGATGTGAACACCGAAACCGTAACTATGAACGCATCTAGTATTCCAAGGTTAGAGTATCTAGGATTCAATTCGTGCAAGATTAGAGAGTTTCCAAATTTCCTAAGATATCAAGATACATTGCGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

18.22

Weight (kDa)

5.23

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AcsI RAATTY 3 cut(s) 302, 319, 448
AfaI GTAC 4 cut(s) 44, 98, 286, 478
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 3 cut(s) 68, 122, 421
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 247
ApoI RAATTY 3 cut(s) 302, 319, 448
AseI ATTAAT 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 4 cut(s) 263, 332, 390, 413
BfrI CTTAAG 1 cut(s) 308
BglII AGATCT 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 139, 169, 398
BsaWI WCCGGW 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 470
BseDI CCNNGG 3 cut(s) 139, 169, 398
BseGI GGATG 3 cut(s) 85, 139, 361
BseMI GCAATG 1 cut(s) 470
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 280
Bsp1407I TGTACA 2 cut(s) 42, 96
Bsp143I GATC 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 470
BsrGI TGTACA 2 cut(s) 42, 96
BssECI CCNNGG 3 cut(s) 139, 169, 398
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 3 cut(s) 139, 169, 398
Bst4CI ACNGT 1 cut(s) 373
BstAFI CTTAAG 1 cut(s) 308
BstAUI TGTACA 2 cut(s) 42, 96
BstDEI CTNAG 4 cut(s) 59, 113, 233, 455
BstF5I GGATG 3 cut(s) 85, 139, 361
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BtsCI GGATG 3 cut(s) 85, 139, 361
Csp6I GTAC 4 cut(s) 43, 97, 285, 477
CviJI RGCY 4 cut(s) 58, 112, 313, 331
CviKI_1 RGCY 4 cut(s) 58, 112, 313, 331
CviQI GTAC 4 cut(s) 43, 97, 285, 477
DdeI CTNAG 4 cut(s) 59, 113, 233, 455
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 324
Eco130I CCWWGG 3 cut(s) 139, 169, 398
Eco32I GATATC 1 cut(s) 461
EcoRV GATATC 1 cut(s) 461
EcoT14I CCWWGG 3 cut(s) 139, 169, 398
ErhI CCWWGG 3 cut(s) 139, 169, 398
FaiI YATR 2 cut(s) 185, 380
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 280
FokI GGATG 3 cut(s) 92, 146, 368
FspBI CTAG 4 cut(s) 263, 332, 390, 413
HapII CCGG 1 cut(s) 342
HinfI GANTC 2 cut(s) 293, 417
HpaII CCGG 1 cut(s) 342
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 43, 97, 361
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 3 cut(s) 43, 97, 361
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 1 cut(s) 429
HpyF3I CTNAG 4 cut(s) 59, 113, 233, 455
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 1 cut(s) 355
LweI GCATC 1 cut(s) 395
MaeI CTAG 4 cut(s) 263, 332, 390, 413
MaeIII GTNAC 2 cut(s) 344, 373
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 101, 251
MflI RGATCY 1 cut(s) 334
MluCI AATT 4 cut(s) 302, 319, 421, 448
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 3 cut(s) 217, 239, 308
MseI TTAA 4 cut(s) 180, 249, 309, 323
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 1 cut(s) 342
NdeII GATC 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 417
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 4 cut(s) 44, 98, 286, 478
RsaNI GTAC 4 cut(s) 43, 97, 285, 477
SaqAI TTAA 4 cut(s) 180, 249, 309, 323
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 1 cut(s) 302
SetI ASST 7 cut(s) 145, 175, 190, 209, 268, 315, 404
SfaNI GCATC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 4 cut(s) 302, 319, 421, 448
SspI AATATT 2 cut(s) 75, 129
SspMI CTAG 4 cut(s) 263, 332, 390, 413
StyI CCWWGG 3 cut(s) 139, 169, 398
TaaI ACNGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 209
TasI AATT 4 cut(s) 302, 319, 421, 448
TatI WGTACW 2 cut(s) 42, 96
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 4 cut(s) 180, 249, 309, 323
Tru9I TTAA 4 cut(s) 180, 249, 309, 323
TspDTI ATGAA 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 308
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 3 cut(s) 302, 319, 448
XcmI CCANNNNNNNNNTGG 2 cut(s) 146, 324
XspI CTAG 4 cut(s) 263, 332, 390, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.