Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6078482 .. 6080731

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGGAAGATGGTCGGGAAAGAGGGTTTTTACGGGTTTAAGAGACTAAAAGAGGTTCGATATGACAAGTTGGGAATGACTGCGGGTTTAAATAAGAGATTTTGTAAGGGAAACGATGCATCGAAAAGACGTTTTGCAAGCGAAAGGACACGATCTTCATTAATCACATCAAGTCAAGTTAAGAGACGCCCCAACGACTGCACCCCACGGTGCTGGCACGCTCGAGCATTCAAAAGAGATAGTTTGTACCAGACTGATTTTGGGAGCCAAACAACCGGGAAACTAATATGGATGCCTGAATCTTCTGCTACTGGAGTTGCATTTGCAGCCATGCTCGACATAGGAAATTTTGTGCTGGTTGACCTCAATTCAATCAATTTGTGGGAGAGTTTTGATGTACCAACTGACACAATCCTACCAACACAGACTCTACATCAAAACAGCACCCTCCAAGCTCGCTTGTCAGTAGCAAATTACTCAAGAGGAAGATTCCTGTTTAAACTAGGATATGATGGAAATCTCTTGCTTTCCACCACATATTTCCCTCTGGATTCTAAAAACTTTGCTTATTGGTCCACCCAAAAAGCGGTGAACAGTGGCTTTCTGGCCATCTTCAACCAGTCTGGTTCTCTTTGCCTGATATCCAAGAATGGAAGCATACTTAACATAGAGTTACAGGAAGCTACAAATGGATTCAAGGAAGAAATAGGCCGTGGTGCTTCTGCAACTGTTTTTAAAGGACTTTTAGCGTTTGATGATGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

255

Amino Acids

28.54

Weight (kDa)

9.72

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	92 - 152	3.6e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	83, 587
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	2 cut(s)	248, 399
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	232, 372, 616, 697
AluBI	AGCT	2 cut(s)	455, 683
AluI	AGCT	2 cut(s)	455, 683
Alw26I	GTCTC	2 cut(s)	37, 178
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	606, 709
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	573
BalI	TGGCCA	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	3 cut(s)	4, 506, 617
BceAI	ACGGC	1 cut(s)	696
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	37, 178
BfaI	CTAG	1 cut(s)	503
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	573
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	4 cut(s)	106, 128, 282, 748
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	206, 712
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	316, 619
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	206, 712
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseNI	ACTGG	2 cut(s)	316, 619
BseXI	GCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	608, 711
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	37, 178
BsmBI	CGTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	608, 711
BsoBI	CYCGRG	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	2 cut(s)	83, 587
BspANI	GGCC	2 cut(s)	608, 711
BspLI	GGNNCC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	316, 619
BssECI	CCNNGG	2 cut(s)	206, 712
BssMI	GATC	1 cut(s)	152
BssNI	GRCGYC	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	210, 596, 730
BstACI	GRCGYC	1 cut(s)	187
BstC8I	GCNNGC	4 cut(s)	139, 215, 219, 457
BstDSI	CCRYGG	2 cut(s)	206, 712
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	37, 178
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	608, 711
BtgI	CCRYGG	2 cut(s)	206, 712
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	4 cut(s)	139, 215, 219, 457
Cfr13I	GGNCC	1 cut(s)	573
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	247, 398
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	7 cut(s)	267, 329, 455, 600, 608, 683, 711
CviKI_1	RGCY	7 cut(s)	267, 329, 455, 600, 608, 683, 711
CviQI	GTAC	2 cut(s)	247, 398
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
DraI	TTTAAA	3 cut(s)	90, 499, 736
EaeI	YGGCCR	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	63, 289, 332, 341, 510, 538, 659, 668
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	608, 711
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	5 cut(s)	299, 427, 489, 551, 693
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	361, 576, 592
Hpy188III	TCNNGA	3 cut(s)	16, 480, 548
Hpy8I	GTNNAC	3 cut(s)	361, 576, 592
HpyCH4III	ACNGT	3 cut(s)	210, 596, 730
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	7 cut(s)	119, 137, 201, 320, 326, 725, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	130
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	4 cut(s)	106, 128, 282, 748
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	6 cut(s)	19, 147, 294, 498, 604, 713
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	4 cut(s)	346, 367, 376, 472
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	421
MnlI	CCTC	6 cut(s)	16, 46, 374, 458, 476, 555
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	7 cut(s)	39, 89, 161, 180, 498, 663, 735
Msp20I	TGGCCA	1 cut(s)	608
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	277
MssI	GTTTAAAC	1 cut(s)	499
Mva1269I	GAATGC	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	222
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	299, 489, 551, 693
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	421
PmeI	GTTTAAAC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	573
PspXI	VCTCGAGB	1 cut(s)	222
RsaI	GTAC	2 cut(s)	248, 399
RsaNI	GTAC	2 cut(s)	247, 398
SaqAI	TTAA	7 cut(s)	39, 89, 161, 180, 498, 663, 735
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	5 cut(s)	57, 133, 366, 457, 685
SfaNI	GCATC	4 cut(s)	106, 128, 282, 748
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	573
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	222, 478
SmoI	CTYRAG	2 cut(s)	222, 478
Sse9I	AATT	4 cut(s)	346, 367, 376, 472
SsiI	CCGC	2 cut(s)	83, 587
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	3 cut(s)	210, 596, 730
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	4 cut(s)	58, 122, 223, 336
TasI	AATT	4 cut(s)	346, 367, 376, 472
TfiI	GAWTC	4 cut(s)	299, 489, 551, 693
Tru1I	TTAA	7 cut(s)	39, 89, 161, 180, 498, 663, 735
Tru9I	TTAA	7 cut(s)	39, 89, 161, 180, 498, 663, 735
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	573
VspI	ATTAAT	1 cut(s)	161
XapI	RAATTY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	222
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.