Rroxscaffold_1G00005450

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
7433944 .. 7437377
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005450.1

Sequence Viewer

Length: 798 bp
ATGATGGGTAGTCAGACAGCAGAAGGAAATTCCCGCAGACCTCCACCTTTACAGATTACAAAGACAAGTAAATCGGAGCCAGTTACTCCAAAAAAACTGCCCAGCAATCTGCAACCAGCTGTATCGAAGCAGGTTTCTGAATGCAAGGCTCAGCAGGATTCTGCCAAATATTTAGCTGATAAGTTAGAATCAAGTTTATCAATGGGTGATCCAACTCAGGTGCCAGCCGATGTGGGCCTCGCAGTGAGTGAGACTGGGAATTTACCGGATGGTGGTGGCGATAAAGTAAAGAAAACAATAGAAAATGGTATTGGCTCAGCAAAAGTCAGCGATGGGGCAAGTAGTCTTGCCAAGACTAGTGGAAGTGCCAAGATTAGTGATCGAGCTGAGTTTGTTGAGAGTGGGAAGAGCAGTATTTGTAGAGGTAGCACAAGCACTGATGTGAGTGATGAAAGTAGTTGTAGCAGCTTTAGTAGTGCTATCAACAAACCTCACAAGGCAAATGACATTCATTGGGAAGCCATACAGGCTGTCCGTGCAAGGGATAGTGTATTTGGTTTAGGCCATTTTAGACTACTGAAAAAGTTGGGTTGTGGGGATATTGGAAGTGTCTATCTTTCTGAGTTGAGTGGAACAAAATGTTATTTTGCAATGAAGGTCATGGACAAGGCATCTTTGGCTAATCGTAAAAACTTCTTCGGGCTCAGACAGAGAGAGAAATACTTCAATGTTTGGACCATCCTTTTCTTCCAACCCTATACACCCATTTTGAAACAGAAAAGTATTCATGTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

265

Amino Acids

28.59

Weight (kDa)

9.34

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 220
AciI CCGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 28, 259
AfiI CCNNNNNNNGG 2 cut(s) 272, 541
AgsI TTSAA 2 cut(s) 727, 772
AhlI ACTAGT 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 4 cut(s) 119, 176, 386, 468
AluI AGCT 4 cut(s) 119, 176, 386, 468
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 203
AoxI GGCC 2 cut(s) 235, 562
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 2 cut(s) 28, 259
Asp700I GAANNNNTTC 1 cut(s) 722
AspS9I GGNCC 2 cut(s) 235, 735
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 735
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 705
BbvI GCAGC 1 cut(s) 477
BccI CCATC 3 cut(s) 263, 326, 746
BcoDI GTCTC 1 cut(s) 245
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 1 cut(s) 466
BlpI GCTNAGC 2 cut(s) 150, 316
BlsI GCNGC 1 cut(s) 467
Bme18I GGWCC 1 cut(s) 735
BmgT120I GGNCC 2 cut(s) 235, 735
BmiI GGNNCC 2 cut(s) 78, 222
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 680
BmuI ACTGGG 1 cut(s) 264
Bpu1102I GCTNAGC 2 cut(s) 150, 316
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 541
Bse1I ACTGG 2 cut(s) 80, 259
Bse3DI GCAATG 1 cut(s) 657
BseGI GGATG 2 cut(s) 274, 738
BseLI CCNNNNNNNGG 2 cut(s) 272, 541
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 6 cut(s) 164, 230, 330, 378, 612, 718
BseNI ACTGG 2 cut(s) 80, 259
BseXI GCAGC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 2 cut(s) 237, 564
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 272, 541
BsmAI GTCTC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 2 cut(s) 237, 564
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 2 cut(s) 208, 379
Bsp1720I GCTNAGC 2 cut(s) 150, 316
BspACI CCGC 1 cut(s) 34
BspANI GGCC 2 cut(s) 237, 564
BspCNI CTCAG 6 cut(s) 163, 229, 329, 379, 613, 717
BspLI GGNNCC 2 cut(s) 78, 222
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 2 cut(s) 80, 259
BssMI GATC 2 cut(s) 208, 379
Bst6I CTCTTC 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 6 cut(s) 150, 216, 316, 387, 621, 704
BstF5I GGATG 2 cut(s) 274, 738
BstKTI GATC 2 cut(s) 211, 382
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 208, 379
BstMWI GCNNNNNNNGC 3 cut(s) 527, 536, 677
BstV1I GCAGC 1 cut(s) 477
BsuRI GGCC 2 cut(s) 237, 564
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 274, 738
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 249, 435
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 235, 735
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 2 cut(s) 661, 788
DdeI CTNAG 6 cut(s) 150, 216, 316, 387, 621, 704
DpnI GATC 2 cut(s) 210, 381
DpnII GATC 2 cut(s) 208, 379
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 705
FaeI CATG 2 cut(s) 664, 791
FaiI YATR 4 cut(s) 524, 662, 759, 789
FatI CATG 2 cut(s) 660, 787
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 466
FokI GGATG 2 cut(s) 281, 725
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 466
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 237, 564
HapII CCGG 1 cut(s) 266
Hin1II CATG 2 cut(s) 664, 791
HinfI GANTC 2 cut(s) 158, 188
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 5 cut(s) 15, 76, 139, 622, 707
HpyAV CCTTC 2 cut(s) 17, 649
HpyCH4V TGCA 4 cut(s) 112, 144, 539, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 536, 677
HpyF3I CTNAG 6 cut(s) 150, 216, 316, 387, 621, 704
Hsp92II CATG 2 cut(s) 664, 791
Kzo9I GATC 2 cut(s) 208, 379
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 1 cut(s) 680
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 210, 381
MboI GATC 2 cut(s) 208, 379
MboII GAAGA 3 cut(s) 418, 688, 739
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 2 cut(s) 28, 259
MmeI TCCRAC 2 cut(s) 236, 775
MnlI CCTC 4 cut(s) 51, 248, 416, 501
MroXI GAANNNNTTC 1 cut(s) 722
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 527, 536, 677
NdeII GATC 2 cut(s) 208, 379
NlaIII CATG 2 cut(s) 664, 791
NlaIV GGNNCC 2 cut(s) 78, 222
OliI CACNNNNGTG 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 401
PctI GAATGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 2 cut(s) 158, 188
PkrI GCNGC 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 78, 222
PspPI GGNCC 2 cut(s) 235, 735
PvuII CAGCTG 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 401
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 2 cut(s) 208, 379
Sau96I GGNCC 2 cut(s) 235, 735
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 1 cut(s) 680
SinI GGWCC 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 2 cut(s) 28, 259
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 170
SspMI CTAG 1 cut(s) 357
TaqI TCGA 2 cut(s) 125, 382
TasI AATT 2 cut(s) 28, 259
TfiI GAWTC 2 cut(s) 158, 188
TscAI CASTG 2 cut(s) 249, 442
TseI GCWGC 1 cut(s) 465
TspDTI ATGAA 4 cut(s) 465, 500, 668, 776
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 2 cut(s) 249, 442
VpaK11BI GGWCC 1 cut(s) 735
XapI RAATTY 2 cut(s) 28, 259
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.