Rroxscaffold_1G00006360

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
8467307 .. 8468557
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006360.1

Sequence Viewer

Length: 405 bp
ATGGACCGGCAAACACGGGTAAACATCATTGAAGGAATTGCACAAGGACTTCTCTATCTTCATAAGCATTCTAGAGTTAGAGTCATACACAGAGATCTGAAAGCTAGTAACATTCTACTTGATGAAAATATGAACCCTAAGATCTCGAGACTTTGGAATGGCCAGAATTTTCGGACGAGAATGAATCTATGGCAAATACGCCATCTATCTCCTGCAAACTACTCGGATTTAACACTCGTTGACAAAAAGATTGGATTTCCTCAACTCATCTTACAATTATCTACCCCTCTGTTCCTTCAAGCTTTAAGCCAATCGGTTGATTCACCTAAGACCCAAACTCGTCGGAAGCTCATTGAATACGCCTGGCAAAAACGAGATATCATGGCAGCCATGGCTTTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

134

Amino Acids

15.68

Weight (kDa)

10.55

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 49 3.4e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 49 3.1e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 166
AgsI TTSAA 3 cut(s) 32, 299, 356
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 3 cut(s) 104, 302, 349
AluI AGCT 3 cut(s) 104, 302, 349
Alw26I GTCTC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 315
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 162
BbvI GCAGC 1 cut(s) 398
BccI CCATC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 2 cut(s) 72, 105
BglII AGATCT 2 cut(s) 94, 141
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 6
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 398
BshFI GGCC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 145
Bsp143I GATC 2 cut(s) 94, 141
Bsp19I CCATGG 1 cut(s) 390
BspANI GGCC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 94, 141
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 364
BstDEI CTNAG 2 cut(s) 138, 327
BstDSI CCRYGG 1 cut(s) 390
BstKTI GATC 2 cut(s) 97, 144
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 94, 141
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 94, 141
BstYI RGATCY 2 cut(s) 94, 141
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 382, 391
CviJI RGCY 7 cut(s) 104, 162, 302, 309, 349, 389, 395
CviKI_1 RGCY 7 cut(s) 104, 162, 302, 309, 349, 389, 395
DdeI CTNAG 2 cut(s) 138, 327
DpnI GATC 2 cut(s) 96, 143
DpnII GATC 2 cut(s) 94, 141
EaeI YGGCCR 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 390
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 385, 394
FaiI YATR 7 cut(s) 63, 86, 131, 190, 383, 392, 403
FatI CATG 2 cut(s) 381, 390
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 2 cut(s) 72, 105
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 7
Hin1II CATG 2 cut(s) 385, 394
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 3 cut(s) 81, 184, 320
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 2 cut(s) 22, 241
Hpy188I TCNGA 4 cut(s) 99, 174, 226, 345
Hpy188III TCNNGA 3 cut(s) 72, 145, 147
Hpy8I GTNNAC 2 cut(s) 22, 241
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 26, 305
HpyCH4V TGCA 2 cut(s) 41, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 138, 327
Hsp92II CATG 2 cut(s) 385, 394
Kzo9I GATC 2 cut(s) 94, 141
LpnPI CCDG 5 cut(s) 20, 176, 225, 349, 376
Lsp1109I GCAGC 1 cut(s) 398
MaeI CTAG 2 cut(s) 72, 105
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 96, 143
MboI GATC 2 cut(s) 94, 141
MboII GAAGA 1 cut(s) 50
MflI RGATCY 2 cut(s) 94, 141
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 3 cut(s) 36, 166, 275
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 2 cut(s) 270, 297
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 2 cut(s) 230, 305
Msp20I TGGCCA 1 cut(s) 162
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 392
NcoI CCATGG 1 cut(s) 390
NdeII GATC 2 cut(s) 94, 141
NlaIII CATG 2 cut(s) 385, 394
PaeR7I CTCGAG 1 cut(s) 145
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 184, 320
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 94, 141
SaqAI TTAA 2 cut(s) 230, 305
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 94, 141
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 364
SetI ASST 4 cut(s) 106, 304, 328, 351
Sfr274I CTCGAG 1 cut(s) 145
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 3 cut(s) 36, 166, 275
SspMI CTAG 2 cut(s) 72, 105
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 390
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 36, 166, 275
TfiI GAWTC 2 cut(s) 184, 320
Tru1I TTAA 2 cut(s) 230, 305
Tru9I TTAA 2 cut(s) 230, 305
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 50, 138, 146, 197
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 145
XspI CTAG 2 cut(s) 72, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.