Rroxscaffold_1G00016010
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
19948406 .. 19952250
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016010.1

Sequence Viewer

Length: 630 bp
ATGGAGAAGGCGATGGCGATCGCGATGTTGGCGATGGACGCGTTCGAGAAAATGGAGAAGGTCGGAGAAGGGACCTACGACAAGCTGAACTTGTCACAAAGCAAGCACTCTTCCCTGGGGATTCGAACTATAGCAGCTCCTACATATATTCGGTTGACCAAGATGTCTCCAAAGATGGATTCTGGAAATAAAGAGTCTCAAAAGAAAAGTTCACCGGAAGAGTTTGATTACGAGATCGATTTCGGTGTGGCTGGAGTGAAGATTGCTAGCTACGGGACGGACACCCGGTCGCCATTGAGGATAATGGCCGAAGGAAGTAATGCTCAGCAACTAAGATATGCTAAAGAGGTATTCGGAAGCTTTGGAAGGAGAGGGACAAGGTCCGGTATTGATTTTGTTTTGGTAGATAATTTGATTCTATCCCTTTCCCCAAAAGGGGCCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGGAGGGTGGTGATATTCAACTTGGAATGGCAATTGATAGTATAAAAGAAGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTAGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTACGCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

5.43

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AccII CGCG 2 cut(s) 23, 41
AcoI YGGCCR 1 cut(s) 306
AfiI CCNNNNNNNGG 3 cut(s) 435, 436, 478
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 2 cut(s) 494, 578
AhdI GACNNNNNGTC 1 cut(s) 286
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 4 cut(s) 85, 137, 270, 360
AluI AGCT 4 cut(s) 85, 137, 270, 360
Alw26I GTCTC 2 cut(s) 171, 201
AoxI GGCC 2 cut(s) 306, 438
ApeKI GCWGC 1 cut(s) 134
AsiSI GCGATCGC 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 72, 381, 438
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 204, 497
AsuII TTCGAA 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 266
AvaII GGWCC 2 cut(s) 72, 381
BbvI GCAGC 1 cut(s) 146
BccI CCATC 3 cut(s) 7, 28, 169
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 549
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 171, 201
BfaI CTAG 2 cut(s) 267, 584
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 549
BisI GCNGC 1 cut(s) 135
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 116, 286
Bme18I GGWCC 2 cut(s) 72, 381
BmeRI GACNNNNNGTC 1 cut(s) 286
BmgT120I GGNCC 3 cut(s) 72, 381, 438
BmiI GGNNCC 2 cut(s) 73, 439
BmrFI CCNGG 2 cut(s) 116, 286
BmtI GCTAGC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 237
BsaBI GATNNNNATC 2 cut(s) 17, 577
BsaJI CCNNGG 2 cut(s) 114, 115
BsaWI WCCGGW 2 cut(s) 214, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 435, 436, 478
Bse8I GATNNNNATC 2 cut(s) 17, 577
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 114, 115
BseGI GGATG 1 cut(s) 597
BseJI GATNNNNATC 2 cut(s) 17, 577
BseLI CCNNNNNNNGG 3 cut(s) 435, 436, 478
BseMII CTCAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 23, 41
Bsh1285I CGRYCG 2 cut(s) 21, 290
BshFI GGCC 2 cut(s) 308, 440
BshVI ATCGAT 1 cut(s) 237
BsiEI CGRYCG 2 cut(s) 21, 290
BsiSI CCGG 3 cut(s) 215, 286, 384
BslFI GGGAC 3 cut(s) 85, 289, 388
BslI CCNNNNNNNGG 3 cut(s) 435, 436, 478
BsmAI GTCTC 2 cut(s) 171, 201
BsmFI GGGAC 3 cut(s) 85, 289, 388
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 308, 440
Bsp119I TTCGAA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 18, 234
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp68I TCGCGA 1 cut(s) 23
BspANI GGCC 2 cut(s) 308, 440
BspCNI CTCAG 1 cut(s) 337
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 2 cut(s) 23, 41
BspLI GGNNCC 2 cut(s) 73, 439
BspOI GCTAGC 1 cut(s) 270
BspT104I TTCGAA 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 114, 115
BssMI GATC 2 cut(s) 18, 234
Bst2UI CCWGG 1 cut(s) 116
Bst6I CTCTTC 3 cut(s) 115, 213, 594
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 104, 268
BstDEI CTNAG 2 cut(s) 324, 332
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 597
BstFNI CGCG 2 cut(s) 23, 41
BstKTI GATC 2 cut(s) 21, 237
BstMAI GTCTC 2 cut(s) 171, 201
BstMBI GATC 2 cut(s) 18, 234
BstMCI CGRYCG 2 cut(s) 21, 290
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 114, 284
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 2 cut(s) 23, 41
BstV1I GCAGC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 237
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 308, 440
BsuTUI ATCGAT 1 cut(s) 237
BtgZI GCGATG 3 cut(s) 26, 38, 47
BtsCI GGATG 1 cut(s) 597
BtuMI TCGCGA 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 104, 268
Cfr13I GGNCC 3 cut(s) 72, 381, 438
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 442
CviJI RGCY 7 cut(s) 85, 137, 251, 270, 308, 360, 440
CviKI_1 RGCY 7 cut(s) 85, 137, 251, 270, 308, 360, 440
DdeI CTNAG 2 cut(s) 324, 332
DpnI GATC 2 cut(s) 20, 236
DpnII GATC 2 cut(s) 18, 234
DrdI GACNNNNNNGTC 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 115, 213, 594
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 3 cut(s) 115, 213, 594
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 72, 381
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 460
FaeI CATG 1 cut(s) 445
FaiI YATR 6 cut(s) 131, 145, 147, 339, 443, 518
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 3 cut(s) 85, 289, 388
FatI CATG 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 604
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 2 cut(s) 267, 584
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 308, 440
HapII CCGG 3 cut(s) 215, 286, 384
HgaI GACGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 445
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 5 cut(s) 121, 179, 194, 415, 578
HpaII CCGG 3 cut(s) 215, 286, 384
HphI GGTGA 2 cut(s) 204, 497
Hpy166II GTNNAC 2 cut(s) 156, 212
Hpy188I TCNGA 2 cut(s) 65, 356
Hpy188III TCNNGA 3 cut(s) 22, 46, 183
Hpy8I GTNNAC 2 cut(s) 156, 212
HpyAV CCTTC 4 cut(s) 52, 62, 305, 360
HpyCH4V TGCA 1 cut(s) 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 2 cut(s) 324, 332
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 2 cut(s) 18, 234
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 101, 128, 168, 228, 237, 299, 397
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 2 cut(s) 267, 584
MaeIII GTNAC 1 cut(s) 93
MalI GATC 2 cut(s) 20, 236
MboI GATC 2 cut(s) 18, 234
MboII GAAGA 5 cut(s) 102, 230, 271, 536, 611
MfeI CAATTG 1 cut(s) 507
MluCI AATT 3 cut(s) 409, 507, 527
MluI ACGCGT 1 cut(s) 39
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 291, 340, 365, 472, 473
MseI TTAA 2 cut(s) 530, 548
MspI CCGG 3 cut(s) 215, 286, 384
MspR9I CCNGG 2 cut(s) 116, 286
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 2 cut(s) 23, 41
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NciI CCSGG 1 cut(s) 286
NdeII GATC 2 cut(s) 18, 234
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 2 cut(s) 73, 439
NmuCI GTSAC 1 cut(s) 93
NruI TCGCGA 1 cut(s) 23
NspV TTCGAA 1 cut(s) 124
PasI CCCWGGG 1 cut(s) 115
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 4 cut(s) 121, 179, 415, 578
PflFI GACNNNGTC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 136
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 73, 439
PspPI GGNCC 3 cut(s) 72, 381, 438
PspPPI RGGWCCY 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 379
PvuI CGATCG 1 cut(s) 21
RgaI GCGATCGC 1 cut(s) 21
RruI TCGCGA 1 cut(s) 23
SaqAI TTAA 2 cut(s) 530, 548
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 18, 234
Sau96I GGNCC 3 cut(s) 72, 381, 438
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 116, 286
SetI ASST 9 cut(s) 63, 77, 87, 139, 272, 351, 362, 383, 474
SfaAI GCGATCGC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 124
SgfI GCGATCGC 1 cut(s) 21
SinI GGWCC 2 cut(s) 72, 381
Sse9I AATT 3 cut(s) 409, 507, 527
SspMI CTAG 2 cut(s) 267, 584
StyD4I CCNGG 2 cut(s) 114, 284
TaqI TCGA 3 cut(s) 45, 124, 237
TasI AATT 3 cut(s) 409, 507, 527
TfiI GAWTC 4 cut(s) 121, 179, 415, 578
Tru1I TTAA 2 cut(s) 530, 548
Tru9I TTAA 2 cut(s) 530, 548
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 608
TspGWI ACGGA 1 cut(s) 293
Tth111I GACNNNGTC 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 72, 381
XagI CCTNNNNNAGG 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XspI CTAG 2 cut(s) 267, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.