Rroxscaffold_1G00021990

protein tyrosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
27076097 .. 27081378
5282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021990.1

Sequence Viewer

Length: 663 bp
ATGAGGTGGCCGGAGTTGTGTTTTCCGGCCGGTCCGAAAACACAAGGCTGCACCGCCGTGGAAGAGAATCGGCGCAGAGGGCACCACGGGGACGACCGAAGGAGGAGGCGACCTGCCGACCAAGTTTCACGGCCGGAGACCGCCGCAATTGGCGGAAAAGTCGGGTCGGATCGACCGGGTCCGGGAAACAAAGGAAATACAGTTTTGGAGAAGGAAAACCTAGAAGCGAGGGATTTAGCCGCAAGAGAGGCTGAGAAATCTCAACTTAGGACGCCCTGCCGGTTGCTGGTTGGAGATTGTGGATTATCAAGAATCAATCACAATACTTTGGTATTTGGTGATGTGCGAGGAAAGCTTCCATGGATGACACCGAATTGTCGAACGGTTTATGTTTTCTCATTTGGAATTTCAATGTGGGAGATTTCATTTGTAATATTGTTTCGAATAACTGAATTGGTTGCTGAGATTGTTGCTAACTTCATTATGAAGGGTTCGGTATTCCAGCAAGGTCGTAGTTCGGGCATATCGTCAAGCAATTGCAATTTTGAGGGTTTTGGCTCATATAGTAAATTGAGCAGCAAATTTGCATTGGTTATTGAGGATGATGTTGGGAAAGTTGGTAGACCTCTCATCAAGACTAAATTCGGGAAGAAGTTCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.48

Weight (kDa)

9.85

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 622
AciI CCGC 5 cut(s) 54, 141, 144, 153, 240
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 3 cut(s) 8, 27, 131
AcsI RAATTY 3 cut(s) 405, 581, 641
AcyI GRCGYC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 182, 286
AgsI TTSAA 1 cut(s) 411
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 177
AoxI GGCC 3 cut(s) 8, 27, 131
ApeKI GCWGC 2 cut(s) 48, 576
ApoI RAATTY 3 cut(s) 405, 581, 641
Asp700I GAANNNNTTC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 32, 179
AsuC2I CCSGG 2 cut(s) 177, 183
AsuHPI GGTGA 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 442
AvaII GGWCC 2 cut(s) 32, 179
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 35, 588
BceAI ACGGC 2 cut(s) 41, 146
BcnI CCSGG 2 cut(s) 177, 183
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 4 cut(s) 49, 144, 240, 577
BlsI GCNGC 4 cut(s) 50, 145, 241, 578
Bme1390I CCNGG 2 cut(s) 177, 183
Bme18I GGWCC 2 cut(s) 32, 179
BmgT120I GGNCC 2 cut(s) 32, 179
BmiI GGNNCC 2 cut(s) 83, 180
BmrFI CCNGG 2 cut(s) 177, 183
Bpu14I TTCGAA 1 cut(s) 442
BpuMI CCSGG 2 cut(s) 177, 183
BsaHI GRCGYC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 57, 85, 359
BsaWI WCCGGW 1 cut(s) 657
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 286
Bse118I RCCGGY 2 cut(s) 29, 279
BseDI CCNNGG 3 cut(s) 57, 85, 359
BseGI GGATG 2 cut(s) 369, 607
BseLI CCNNNNNNNGG 2 cut(s) 182, 286
BseMII CTCAG 2 cut(s) 243, 453
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 84
BseX3I CGGCCG 2 cut(s) 27, 131
BseXI GCAGC 2 cut(s) 35, 588
BsgI GTGCAG 1 cut(s) 34
Bsh1285I CGRYCG 4 cut(s) 30, 97, 134, 176
BshFI GGCC 3 cut(s) 10, 29, 133
BshNI GGYRCC 1 cut(s) 81
BsiEI CGRYCG 4 cut(s) 30, 97, 134, 176
BsiSI CCGG 8 cut(s) 11, 26, 30, 134, 176, 182, 280, 658
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 182, 286
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 3 cut(s) 10, 29, 133
Bso31I GGTCTC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 5 cut(s) 54, 141, 144, 153, 240
BspANI GGCC 3 cut(s) 10, 29, 133
BspCNI CTCAG 2 cut(s) 244, 454
BspLI GGNNCC 2 cut(s) 83, 180
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 131
BsrFI RCCGGY 2 cut(s) 29, 279
BssAI RCCGGY 2 cut(s) 29, 279
BssECI CCNNGG 3 cut(s) 57, 85, 359
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 202, 385
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 442
BstDEI CTNAG 3 cut(s) 252, 266, 462
BstDSI CCRYGG 3 cut(s) 57, 85, 359
BstF5I GGATG 2 cut(s) 369, 607
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 169
BstMCI CGRYCG 4 cut(s) 30, 97, 134, 176
BstMWI GCNNNNNNNGC 3 cut(s) 79, 248, 352
BstSCI CCNGG 2 cut(s) 175, 181
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 35, 588
BstZI CGGCCG 2 cut(s) 27, 131
BsuRI GGCC 3 cut(s) 10, 29, 133
BtgI CCRYGG 3 cut(s) 57, 85, 359
BtsCI GGATG 2 cut(s) 369, 607
BveI ACCTGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 75
Cfr10I RCCGGY 2 cut(s) 29, 279
Cfr13I GGNCC 2 cut(s) 32, 179
CpoI CGGWCCG 1 cut(s) 32
CseI GACGC 1 cut(s) 280
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 1 cut(s) 360
CviJI RGCY 8 cut(s) 10, 29, 48, 133, 239, 251, 355, 558
CviKI_1 RGCY 8 cut(s) 10, 29, 48, 133, 239, 251, 355, 558
DdeI CTNAG 3 cut(s) 252, 266, 462
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 3 cut(s) 8, 27, 131
EagI CGGCCG 2 cut(s) 27, 131
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 168
EclXI CGGCCG 2 cut(s) 27, 131
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 32, 179
Eco52I CGGCCG 2 cut(s) 27, 131
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 1 cut(s) 363
FaiI YATR 6 cut(s) 361, 390, 485, 524, 562, 564
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 359
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 4 cut(s) 49, 144, 240, 577
FokI GGATG 2 cut(s) 376, 614
Fsp4HI GCNGC 4 cut(s) 49, 144, 240, 577
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 49, 144, 240, 577
HaeIII GGCC 3 cut(s) 10, 29, 133
HapII CCGG 8 cut(s) 11, 26, 30, 134, 176, 182, 280, 658
HgaI GACGC 1 cut(s) 280
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 363
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 67, 312
HpaII CCGG 8 cut(s) 11, 26, 30, 134, 176, 182, 280, 658
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 2 cut(s) 36, 169
Hpy188III TCNNGA 3 cut(s) 309, 634, 646
Hpy8I GTNNAC 1 cut(s) 623
HpyAV CCTTC 3 cut(s) 93, 205, 481
HpyCH4III ACNGT 2 cut(s) 202, 385
HpyCH4V TGCA 3 cut(s) 51, 540, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 248, 352
HpyF3I CTNAG 3 cut(s) 252, 266, 462
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 363
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 35, 588
MaeI CTAG 1 cut(s) 221
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 74, 661
MfeI CAATTG 2 cut(s) 147, 535
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 9 cut(s) 147, 373, 405, 452, 535, 541, 569, 581, 641
MmeI TCCRAC 2 cut(s) 147, 271
MnlI CCTC 9 cut(s) 71, 96, 99, 222, 241, 341, 541, 592, 636
MroXI GAANNNNTTC 1 cut(s) 653
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 8 cut(s) 11, 26, 30, 134, 176, 182, 280, 658
MspR9I CCNGG 2 cut(s) 177, 183
MunI CAATTG 2 cut(s) 147, 535
MwoI GCNNNNNNNGC 3 cut(s) 79, 248, 352
NciI CCSGG 2 cut(s) 177, 183
NcoI CCATGG 1 cut(s) 359
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 2 cut(s) 83, 180
NspV TTCGAA 1 cut(s) 442
OliI CACNNNNGTG 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 67, 312
PflFI GACNNNGTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 4 cut(s) 50, 145, 241, 578
PspN4I GGNNCC 2 cut(s) 83, 180
PspPI GGNCC 2 cut(s) 32, 179
PsyI GACNNNGTC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 56
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SatI GCNGC 4 cut(s) 49, 144, 240, 577
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 32, 179
ScrFI CCNGG 2 cut(s) 177, 183
SduI GDGCHC 1 cut(s) 84
SetI ASST 6 cut(s) 8, 115, 222, 357, 511, 628
SfuI TTCGAA 1 cut(s) 442
SinI GGWCC 2 cut(s) 32, 179
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 9 cut(s) 147, 373, 405, 452, 535, 541, 569, 581, 641
SsiI CCGC 5 cut(s) 54, 141, 144, 153, 240
SspI AATATT 1 cut(s) 435
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 175, 181
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 202, 385
TaqI TCGA 3 cut(s) 172, 379, 442
TaqII GACCGA 1 cut(s) 111
TasI AATT 9 cut(s) 147, 373, 405, 452, 535, 541, 569, 581, 641
TauI GCSGC 2 cut(s) 146, 242
TfiI GAWTC 2 cut(s) 67, 312
TseI GCWGC 2 cut(s) 48, 576
TspDTI ATGAA 3 cut(s) 414, 469, 500
Tth111I GACNNNGTC 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 32, 179
XapI RAATTY 3 cut(s) 405, 581, 641
XmiI GTMKAC 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.