Rroxscaffold_1G00026810

receptor-like protein 12

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
33749450 .. 33751961
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026810.1

Sequence Viewer

Length: 564 bp
ATGGTTTATGAGGAAAACCTAGATCACACTAGTTTCTTAGGTTGGTGGATTGATGATGTTGAAGAGGGGGAAGTTGGACCCGATGAGGAAGATAAGTCTGATCTTGAAGAATGGAATCCTCAGTTTGTGCTTGAGCAAGATGAAAATGTGGAAGAGGTTGTGAATGTGCAAGAGCACTATGAAAATGTGCAGCAACAGACCACATCCTCGGTCGTATCAACCCACCGAAGTTGTGCCGAGTCACAACTCGCTTATGAGGCCACTCGGCAATCACTTACCTCTACTGCTCCAAAAAGCTCATCCATCCCCCAATTCGGACATAGAAGGTTCAAGTCATTAGCCCACGAAAGCGAAGGCCTCATAATGCCCCTTCTTCACCGATATGATAATACATTTCATAATATGCCACTTGACAAGCTCTCAGTAACGGAGTTAACGACTCAGATATCAAAGTTCGGTCGGGTGACATATTATGTAACGGAGTTAACGACTCTAGATACAAAAATTTCTAGTAATCCAAACGTGAGGCATGGTACTGATAATTTTCCCTTGAATAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

21.48

Weight (kDa)

4.65

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 504
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 4 cut(s) 62, 107, 331, 553
AhlI ACTAGT 1 cut(s) 29
AluBI AGCT 2 cut(s) 297, 418
AluI AGCT 2 cut(s) 297, 418
Alw21I GWGCWC 1 cut(s) 177
AoxI GGCC 2 cut(s) 258, 355
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 368, 475
AvaII GGWCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 4 cut(s) 20, 30, 494, 510
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 203, 299, 303
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 3 cut(s) 134, 435, 455
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 209
Bsh1285I CGRYCG 2 cut(s) 213, 460
BshFI GGCC 2 cut(s) 260, 357
BsiEI CGRYCG 2 cut(s) 213, 460
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 2 cut(s) 260, 357
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 22, 100
BspANI GGCC 2 cut(s) 260, 357
BspCNI CTCAG 3 cut(s) 133, 434, 454
BspLI GGNNCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 22, 100
Bst6I CTCTTC 2 cut(s) 57, 147
BstDEI CTNAG 4 cut(s) 37, 120, 421, 441
BstF5I GGATG 3 cut(s) 203, 299, 303
BstKTI GATC 2 cut(s) 25, 103
BstMBI GATC 2 cut(s) 22, 100
BstMCI CGRYCG 2 cut(s) 213, 460
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 260, 357
BtsCI GGATG 3 cut(s) 203, 299, 303
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 534
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 1 cut(s) 530
CviJI RGCY 5 cut(s) 260, 297, 341, 357, 418
CviKI_1 RGCY 5 cut(s) 260, 297, 341, 357, 418
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 4 cut(s) 37, 120, 421, 441
DpnI GATC 2 cut(s) 24, 102
DpnII GATC 2 cut(s) 22, 100
Eam1104I CTCTTC 2 cut(s) 57, 147
EarI CTCTTC 2 cut(s) 57, 147
Eco147I AGGCCT 1 cut(s) 357
Eco32I GATATC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 77
EcoRV GATATC 1 cut(s) 447
FaeI CATG 1 cut(s) 533
FatI CATG 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 3 cut(s) 190, 286, 290
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 4 cut(s) 20, 30, 494, 510
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 2 cut(s) 260, 357
Hin1II CATG 1 cut(s) 533
HincII GTYRAC 2 cut(s) 435, 486
HindII GTYRAC 2 cut(s) 435, 486
HinfI GANTC 4 cut(s) 115, 239, 439, 490
HpaI GTTAAC 2 cut(s) 435, 486
HphI GGTGA 2 cut(s) 368, 475
Hpy166II GTNNAC 2 cut(s) 435, 486
Hpy188I TCNGA 3 cut(s) 100, 317, 444
Hpy188III TCNNGA 2 cut(s) 104, 494
Hpy8I GTNNAC 2 cut(s) 435, 486
HpyAV CCTTC 3 cut(s) 318, 347, 380
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 2 cut(s) 169, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 4 cut(s) 37, 120, 421, 441
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 1 cut(s) 533
KspAI GTTAAC 2 cut(s) 435, 486
Kzo9I GATC 2 cut(s) 22, 100
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 4 cut(s) 20, 30, 494, 510
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 4 cut(s) 240, 424, 463, 475
MalI GATC 2 cut(s) 24, 102
MboI GATC 2 cut(s) 22, 100
MboII GAAGA 5 cut(s) 74, 101, 119, 164, 365
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 311, 504, 541
MlyI GAGTC 3 cut(s) 248, 433, 484
MmeI TCCRAC 1 cut(s) 55
MseI TTAA 2 cut(s) 434, 485
MslI CAYNNNNRTG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 2 cut(s) 22, 100
NlaIII CATG 1 cut(s) 533
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 2 cut(s) 244, 262
NmuCI GTSAC 2 cut(s) 240, 463
PceI AGGCCT 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 434, 485
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 3 cut(s) 247, 433, 484
PpsI GAGTC 3 cut(s) 247, 433, 484
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 2 cut(s) 434, 485
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 22, 100
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 3 cut(s) 248, 433, 484
SduI GDGCHC 1 cut(s) 177
SetI ASST 8 cut(s) 21, 43, 159, 281, 299, 329, 420, 525
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 3 cut(s) 311, 504, 541
SseBI AGGCCT 1 cut(s) 357
SspMI CTAG 4 cut(s) 20, 30, 494, 510
StuI AGGCCT 1 cut(s) 357
TaiI ACGT 1 cut(s) 525
TaqII GACCGA 2 cut(s) 199, 446
TasI AATT 3 cut(s) 311, 504, 541
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 434, 485
Tru9I TTAA 2 cut(s) 434, 485
TseFI GTSAC 2 cut(s) 240, 463
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 240, 463
TspDTI ATGAA 3 cut(s) 156, 195, 386
TspGWI ACGGA 2 cut(s) 443, 494
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 504
XbaI TCTAGA 1 cut(s) 493
XspI CTAG 4 cut(s) 20, 30, 494, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.