Rroxscaffold_1G00029660

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
38357725 .. 38369548
11824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029660.1

Sequence Viewer

Length: 621 bp
ATGGTGGTGCTGATGGCTCGCCCTTGTTGTCATTTTGAGATTGCGAGTGCTCCATCACGCCATTCCATTCACTTCTCTTTGCTTTTCCGATCGAAGAAGAGAGATGGGATCGGGGAGAAGGAGAAAAAGAGGGAGGTCCGGAGCAATAATGCAGAGGTAGTGCAGCTGGAGCTTCTAATATCACGGACTGTTGTTCTTTGTTCTGTTGGGTTGAGTTGCGAGAGGACGATGGGGAAACGAGTTGGCGAAGTTTTGAAAGAATATTGGACGACCAAGAGACATTTTCAACCACAGTTCTTCTTCGCCTTCAAATATGTATGCAACATAAGCTTTTTCATTGCCCACCATCAACTCGTGAGAGATCAATATATTAAAGACGGTTATCTTTGTCCGGCAAGATTGAGCCCTTGCCATGGTAATCCAGGCAACCATATTTATGTTGTTGGGCCAGGTTGTTCTATTGATGACATACTCCTAGTGTCTTGTACCAAGGTGCATGACTACAAAGATGCTCTTGCATACCCATATGGTTTCTCACGCATGTATCTCCACCGGTCCATACCATCTTGGTTTCTCACGCATGTATCTCCACTGGTCCATACCATCTTGCCAACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

23.66

Weight (kDa)

9.26

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 138
AclWI GGATC 1 cut(s) 116
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 413
AgeI ACCGGT 1 cut(s) 552
AgsI TTSAA 3 cut(s) 256, 287, 310
AjnI CCWGG 2 cut(s) 421, 448
AluBI AGCT 3 cut(s) 166, 172, 330
AluI AGCT 3 cut(s) 166, 172, 330
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 138
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 1 cut(s) 163
AsiGI ACCGGT 1 cut(s) 552
AspS9I GGNCC 4 cut(s) 136, 446, 555, 595
AvaII GGWCC 3 cut(s) 136, 555, 595
BaeI ACNNNNGTAYC 4 cut(s) 527, 560, 567, 600
BanII GRGCYC 1 cut(s) 407
BauI CACGAG 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 175
BccI CCATC 7 cut(s) 7, 61, 98, 223, 354, 571, 611
BciT130I CCWGG 2 cut(s) 423, 450
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 476
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 423, 450
Bme18I GGWCC 3 cut(s) 136, 555, 595
BmgT120I GGNCC 4 cut(s) 136, 446, 555, 595
BmrFI CCNGG 2 cut(s) 423, 450
BmsI GCATC 1 cut(s) 499
BpmI CTGGAG 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 412, 489
BsaWI WCCGGW 2 cut(s) 138, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 552
Bse1I ACTGG 1 cut(s) 597
Bse3DI GCAATG 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 138
BseBI CCWGG 2 cut(s) 423, 450
BseDI CCNNGG 2 cut(s) 412, 489
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 597
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 3 cut(s) 139, 392, 553
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 271
BsnI GGCC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 52, 407
Bsp13I TCCGGA 1 cut(s) 138
Bsp143I GATC 3 cut(s) 89, 108, 361
Bsp19I CCATGG 1 cut(s) 412
BspANI GGCC 1 cut(s) 448
BspEI TCCGGA 1 cut(s) 138
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 552
BsrI ACTGG 1 cut(s) 597
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 2 cut(s) 412, 489
BssMI GATC 3 cut(s) 89, 108, 361
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 412, 489
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 423, 450
Bst4CI ACNGT 3 cut(s) 190, 294, 380
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 412
BstKTI GATC 3 cut(s) 92, 111, 364
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 3 cut(s) 89, 108, 361
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 169, 327
BstNI CCWGG 2 cut(s) 423, 450
BstNSI RCATGY 2 cut(s) 544, 584
BstSCI CCNGG 2 cut(s) 421, 448
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 552
Cfr13I GGNCC 4 cut(s) 136, 446, 555, 595
Csp6I GTAC 1 cut(s) 486
CspAI ACCGGT 1 cut(s) 552
CviAII CATG 4 cut(s) 413, 497, 541, 581
CviJI RGCY 6 cut(s) 17, 166, 172, 330, 405, 448
CviKI_1 RGCY 6 cut(s) 17, 166, 172, 330, 405, 448
CviQI GTAC 1 cut(s) 486
DpnI GATC 3 cut(s) 91, 110, 363
DpnII GATC 3 cut(s) 89, 108, 361
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 412, 489
Eco24I GRGCYC 1 cut(s) 407
Eco47I GGWCC 3 cut(s) 136, 555, 595
EcoRII CCWGG 2 cut(s) 421, 448
EcoT14I CCWWGG 2 cut(s) 412, 489
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 412, 489
FaeI CATG 4 cut(s) 416, 500, 544, 584
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FatI CATG 4 cut(s) 412, 496, 540, 580
FauNDI CATATG 1 cut(s) 526
Fnu4HI GCNGC 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 476
GluI GCNGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 448
HapII CCGG 3 cut(s) 139, 392, 553
Hin1II CATG 4 cut(s) 416, 500, 544, 584
HindIII AAGCTT 1 cut(s) 328
HpaII CCGG 3 cut(s) 139, 392, 553
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 139, 355
HpyAV CCTTC 2 cut(s) 112, 316
HpyCH4III ACNGT 3 cut(s) 190, 294, 380
HpyCH4V TGCA 5 cut(s) 152, 163, 321, 496, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 327
Hsp92II CATG 4 cut(s) 416, 500, 544, 584
Kpn2I TCCGGA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 89, 108, 361
LmnI GCTCC 3 cut(s) 55, 141, 169
LpnPI CCDG 9 cut(s) 152, 152, 405, 408, 435, 435, 462, 566, 578
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 499
MaeI CTAG 1 cut(s) 476
MalI GATC 3 cut(s) 91, 110, 363
MboI GATC 3 cut(s) 89, 108, 361
MboII GAAGA 4 cut(s) 106, 109, 289, 292
MhlI GDGCHC 2 cut(s) 52, 407
MnlI CCTC 4 cut(s) 123, 127, 148, 216
MroI TCCGGA 1 cut(s) 138
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 3 cut(s) 139, 392, 553
MspR9I CCNGG 2 cut(s) 423, 450
MvaI CCWGG 2 cut(s) 423, 450
MwoI GCNNNNNNNGC 2 cut(s) 169, 327
NcoI CCATGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 526
NdeII GATC 3 cut(s) 89, 108, 361
NlaIII CATG 4 cut(s) 416, 500, 544, 584
NspI RCATGY 2 cut(s) 544, 584
PinAI ACCGGT 1 cut(s) 552
PkrI GCNGC 1 cut(s) 165
Ple19I CGATCG 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 421, 448
PspGI CCWGG 2 cut(s) 421, 448
PspPI GGNCC 4 cut(s) 136, 446, 555, 595
PvuI CGATCG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 89, 108, 361
Sau96I GGNCC 4 cut(s) 136, 446, 555, 595
ScrFI CCNGG 2 cut(s) 423, 450
SduI GDGCHC 2 cut(s) 52, 407
SetI ASST 7 cut(s) 138, 159, 168, 174, 332, 454, 495
SfaNI GCATC 1 cut(s) 499
SinI GGWCC 3 cut(s) 136, 555, 595
SmiMI CAYNNNNRTG 1 cut(s) 435
SspI AATATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 421, 448
StyI CCWWGG 2 cut(s) 412, 489
TaaI ACNGT 3 cut(s) 190, 294, 380
TaqI TCGA 1 cut(s) 92
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 597
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 597
VpaK11BI GGWCC 3 cut(s) 136, 555, 595
XceI RCATGY 2 cut(s) 544, 584
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.