Rroxscaffold_1G00033200

Leucine-rich repeats, typical (most populated) subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
47896402 .. 47900382
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033200.1

Sequence Viewer

Length: 435 bp
ATGGAGCTTATGGTTTCGATAATGTGTGGTTGGTTGAAGAGGTTGATTGAGGACGGGAATGATGTTGCTGATGTGATTGACCTTCTGGTGGATGTGGATTGTGTTGGGTTGAAGCCGAGTTTTAGCATGATGGAGCAAGTGATTTCATTGTATTGGGAGATGGGGGAGAAGGAGAATGCGGTTTTGTTTGTGAAAGAAGCGTTGAAACGCGGGATTGTGTATTCCGTGGAAAATGACAGAGATGGACATAAAGGAGGGCCAACTGGGTATCTTGCTTGGAAGATGATGGAAACCAGTGCCATTGCAAGGTTGCTTACTAGGACAGAGGTCAGCAGCTCTTTATGTAAGAAGAAAAGCCTCTCATGGCTGTTAAGAGGTTACATTAAAGGAGGACATTTTGATGATACTGCAGAAGCAGTAATTAAAATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

5.43

Isoelectric Point (pI)

19.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 179, 210
AfiI CCNNNNNNNGG 2 cut(s) 88, 306
AgsI TTSAA 3 cut(s) 37, 112, 205
AluBI AGCT 2 cut(s) 7, 336
AluI AGCT 2 cut(s) 7, 336
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 345
BccI CCATC 4 cut(s) 124, 154, 236, 280
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 273
BoxI GACNNNNGTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 306
Bse1I ACTGG 2 cut(s) 268, 294
Bse3DI GCAATG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 88, 306
BseMI GCAATG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 268, 294
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 88, 306
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 259
BspACI CCGC 2 cut(s) 179, 210
BspANI GGCC 1 cut(s) 259
BspFNI CGCG 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 2 cut(s) 268, 294
BssECI CCNNGG 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 210
BstPAI GACNNNNGTC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 2 cut(s) 127, 363
CviJI RGCY 6 cut(s) 7, 115, 259, 336, 357, 367
CviKI_1 RGCY 6 cut(s) 7, 115, 259, 336, 357, 367
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaeI CATG 2 cut(s) 130, 366
FaiI YATR 5 cut(s) 11, 128, 249, 343, 364
FatI CATG 2 cut(s) 126, 362
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 334
HaeIII GGCC 1 cut(s) 259
Hin1II CATG 2 cut(s) 130, 366
HpyAV CCTTC 2 cut(s) 92, 163
HpyCH4V TGCA 2 cut(s) 305, 410
Hsp92II CATG 2 cut(s) 130, 366
LmnI GCTCC 2 cut(s) 4, 133
LpnPI CCDG 3 cut(s) 71, 249, 307
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 377
MboII GAAGA 3 cut(s) 49, 292, 361
MluCI AATT 1 cut(s) 420
MnlI CCTC 7 cut(s) 33, 43, 248, 319, 368, 368, 383
MseI TTAA 3 cut(s) 371, 384, 423
MslI CAYNNNNRTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 181
MvnI CGCG 1 cut(s) 210
NlaIII CATG 2 cut(s) 130, 366
NmeAIII GCCGAG 1 cut(s) 141
PctI GAATGC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 335
PshAI GACNNNNGTC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 3 cut(s) 371, 384, 423
SatI GCNGC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 257
SetI ASST 7 cut(s) 9, 44, 84, 311, 330, 338, 379
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 1 cut(s) 420
SsiI CCGC 2 cut(s) 179, 210
SspMI CTAG 1 cut(s) 318
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 420
Tru1I TTAA 3 cut(s) 371, 384, 423
Tru9I TTAA 3 cut(s) 371, 384, 423
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 1 cut(s) 135
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 301
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.