Rroxscaffold_1G00041420

receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
59320026 .. 59323932
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041420.1

Sequence Viewer

Length: 342 bp
ATGAACTTTGTTTCCGAACCCGATTCGTGCATCGGGCTCTTACTTCTTCGATTCTGCAAATCCTTCTCGGGAACACATTATACCCGGCTTGCTTGCGTCTTCGATTTGGCACCGAATCTATCTCAAGTGGCATTGACAATTCCAGCGAGTCTCTTCGATCTTCAAAGCCTTAATTTGGCCTACAATTATGACTTCGGTGGCTCTCGGATCCCAATCGCCATTGGAAAGCTCACAAACTTGAGGTATCTAAACTTATCTCACAATTCTTACTTCGGGCAAATTCCTATTGAGATTTCATACTTGACAAGTGTTAACGTTAGAGTTCGCAGGGCCTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

8.93

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AclI AACGTT 1 cut(s) 315
AclWI GGATC 2 cut(s) 202, 215
AcsI RAATTY 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 164
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 202, 215
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 2 cut(s) 177, 330
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 67
BamHI GGATCC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 111, 209
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 91
BpuEI CTTGAG 2 cut(s) 108, 259
BpuMI CCSGG 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 212
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 175
BshFI GGCC 2 cut(s) 179, 332
BshNI GGYRCC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 2 cut(s) 179, 332
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 157, 207
BspANI GGCC 2 cut(s) 179, 332
BspLI GGNNCC 2 cut(s) 111, 209
BspPI GGATC 2 cut(s) 202, 215
BspT107I GGYRCC 1 cut(s) 109
BssMI GATC 2 cut(s) 157, 207
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 90, 94
BstKTI GATC 2 cut(s) 160, 210
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 157, 207
BstSCI CCNGG 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 2 cut(s) 179, 332
Cac8I GCNNGC 2 cut(s) 90, 94
Cfr13I GGNCC 1 cut(s) 330
CseI GACGC 1 cut(s) 85
CviJI RGCY 7 cut(s) 37, 88, 168, 179, 201, 229, 332
CviKI_1 RGCY 7 cut(s) 37, 88, 168, 179, 201, 229, 332
DpnI GATC 2 cut(s) 159, 209
DpnII GATC 2 cut(s) 157, 207
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 39
FaiI YATR 3 cut(s) 81, 189, 298
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 179, 332
HapII CCGG 1 cut(s) 85
HgaI GACGC 1 cut(s) 85
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 4 cut(s) 23, 51, 115, 148
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 16, 207
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 30, 57
HpySE526I ACGT 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 157, 207
LpnPI CCDG 3 cut(s) 98, 156, 313
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 315
MalI GATC 2 cut(s) 159, 209
MboI GATC 2 cut(s) 157, 207
MboII GAAGA 4 cut(s) 38, 91, 145, 152
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 5 cut(s) 138, 172, 184, 262, 279
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 1 cut(s) 234
MseI TTAA 2 cut(s) 171, 312
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 85
NciI CCSGG 1 cut(s) 85
NdeII GATC 2 cut(s) 157, 207
NlaIV GGNNCC 2 cut(s) 111, 209
PfeI GAWTC 3 cut(s) 23, 51, 115
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 111, 209
PspPI GGNCC 1 cut(s) 330
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PsuI RGATCY 1 cut(s) 207
SaqAI TTAA 2 cut(s) 171, 312
Sau3AI GATC 2 cut(s) 157, 207
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 231, 245, 318
SfaNI GCATC 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 123, 238
SmoI CTYRAG 2 cut(s) 123, 238
Sse9I AATT 5 cut(s) 138, 172, 184, 262, 279
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 49, 102, 156
TasI AATT 5 cut(s) 138, 172, 184, 262, 279
TfiI GAWTC 3 cut(s) 23, 51, 115
Tru1I TTAA 2 cut(s) 171, 312
Tru9I TTAA 2 cut(s) 171, 312
TspDTI ATGAA 2 cut(s) 17, 285
XapI RAATTY 1 cut(s) 279
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.