Rroxscaffold_1G00043600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
62245310 .. 62246890
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043600.1

Sequence Viewer

Length: 477 bp
ATGCTGATCGAGAGCGCTAGCTTTACGGATTTATGCGGTAGCTTGGGTGTACTACAGAGTGCTTTGTTGCGGGAACTACACATTGAGAATTACTCACGAGAGATGGGGCTGCGGTGGTGGCACACTGCCTTTGATTCGGAGACCATCGGTGGTGATGTTGTGGCTCTTATGGATGATGGGAATTTTGTCTTGCCAGAAGTGAGTGATGATGGATCGGTGAAGAGGTTGTGGCAGAGTTTTGATTTTCCTGGAGATGTGCTTCTGCCAGGATTCTTTGATGGACACAACTTGAAAATTAAGCGGCGTGGGGTGGTGTATTGGAGTGATGGAGTGTTTAGAGATGGGAGTTTTAAAAATATTAAGCAAGAAGAGGGCGATTCGGGGAAGATCAGGCAGTTGGATCTTCGTGATAATTCTGGAGGACGATCACGGGCGATGCGCGAGGATCCGACCGTTGGATCGTCGTATAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.74

Weight (kDa)

4.96

Isoelectric Point (pI)

65.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 38 - 99 4.9e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 441
AciI CCGC 4 cut(s) 36, 70, 112, 301
AclWI GGATC 5 cut(s) 220, 408, 440, 453, 466
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 2 cut(s) 247, 265
AluBI AGCT 2 cut(s) 21, 42
AluI AGCT 2 cut(s) 21, 42
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 5 cut(s) 220, 408, 440, 453, 466
Aor51HI AGCGCT 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 2 cut(s) 17, 441
AsuHPI GGTGA 2 cut(s) 164, 229
AsuNHI GCTAGC 1 cut(s) 17
BamHI GGATCC 1 cut(s) 445
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 1 cut(s) 96
BccI CCATC 7 cut(s) 97, 152, 170, 203, 272, 320, 335
BciT130I CCWGG 2 cut(s) 249, 267
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 110, 302
BlsI GCNGC 2 cut(s) 111, 303
Bme1390I CCNGG 2 cut(s) 249, 267
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 249, 267
BmsI GCATC 1 cut(s) 426
BmtI GCTAGC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpmI CTGGAG 2 cut(s) 270, 438
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 455
BseBI CCWGG 2 cut(s) 249, 267
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
BspACI CCGC 4 cut(s) 36, 70, 112, 301
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 447
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 5 cut(s) 220, 408, 440, 453, 466
BspTNI GGTCTC 1 cut(s) 134
BssMI GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 249, 267
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 2 cut(s) 215, 363
BstC8I GCNNGC 1 cut(s) 19
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 441
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 441
BstKTI GATC 7 cut(s) 9, 215, 390, 403, 428, 448, 461
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 2 cut(s) 249, 267
BstSCI CCNGG 2 cut(s) 247, 265
BstSFI CTRYAG 1 cut(s) 53
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 400, 445
BstYI RGATCY 2 cut(s) 400, 445
BtgZI GCGATG 1 cut(s) 449
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 2 cut(s) 17, 441
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 4 cut(s) 21, 42, 109, 164
CviKI_1 RGCY 4 cut(s) 21, 42, 109, 164
CviQI GTAC 1 cut(s) 50
DpnI GATC 7 cut(s) 8, 214, 389, 402, 427, 447, 460
DpnII GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 215, 363
EarI CTCTTC 2 cut(s) 215, 363
Eco31I GGTCTC 1 cut(s) 134
Eco47III AGCGCT 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 247, 265
FaiI YATR 3 cut(s) 34, 170, 468
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 110, 302
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 110, 302
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 16, 440
GluI GCNGC 2 cut(s) 110, 302
GsuI CTGGAG 2 cut(s) 270, 438
HaeII RGCGCY 1 cut(s) 18
HhaI GCGC 2 cut(s) 17, 441
Hin6I GCGC 2 cut(s) 15, 439
HinP1I GCGC 2 cut(s) 15, 439
HinfI GANTC 3 cut(s) 134, 270, 377
HphI GGTGA 2 cut(s) 164, 229
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 139, 450
Hpy188III TCNNGA 4 cut(s) 10, 96, 407, 417
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HspAI GCGC 2 cut(s) 15, 439
Kzo9I GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
LpnPI CCDG 7 cut(s) 207, 234, 252, 261, 279, 376, 402
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 18
MalI GATC 7 cut(s) 8, 214, 389, 402, 427, 447, 460
MboI GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
MboII GAAGA 4 cut(s) 232, 380, 395, 397
MflI RGATCY 2 cut(s) 400, 445
MluCI AATT 4 cut(s) 88, 181, 294, 412
MmeI TCCRAC 3 cut(s) 378, 436, 473
MnlI CCTC 4 cut(s) 216, 364, 413, 436
MseI TTAA 3 cut(s) 297, 351, 360
MspR9I CCNGG 2 cut(s) 249, 267
MvaI CCWGG 2 cut(s) 249, 267
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
NheI GCTAGC 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 447
PfeI GAWTC 3 cut(s) 134, 270, 377
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 2 cut(s) 111, 303
Psp6I CCWGG 2 cut(s) 247, 265
PspGI CCWGG 2 cut(s) 247, 265
PspN4I GGNNCC 1 cut(s) 447
PsuI RGATCY 2 cut(s) 400, 445
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 297, 351, 360
SatI GCNGC 2 cut(s) 110, 302
Sau3AI GATC 7 cut(s) 6, 212, 387, 400, 425, 445, 458
ScrFI CCNGG 2 cut(s) 249, 267
SetI ASST 3 cut(s) 23, 44, 227
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 88, 181, 294, 412
SsiI CCGC 4 cut(s) 36, 70, 112, 301
SspI AATATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 247, 265
TaaI ACNGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 9
TasI AATT 4 cut(s) 88, 181, 294, 412
TatI WGTACW 1 cut(s) 49
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 3 cut(s) 134, 270, 377
Tru1I TTAA 3 cut(s) 297, 351, 360
Tru9I TTAA 3 cut(s) 297, 351, 360
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 130
XapI RAATTY 1 cut(s) 181
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.