Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

63839433 .. 63843243

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGACCCGGAACCGGGAGTTGTACATGTGGGATAAACCCGATGGGGGTTCTGCAGTTGTTTCGCGCAAGGGTAGAGAAGCATTGTGGCGGGGCGGCCCTTGGACCGGGCACGTATTGAGCGGTACCGCCGGAGACTACAATTCAAGTATTGTCAACAATGAAGACGAGATATCCTTCGCGTATTTGGACTCGCAGATCACAAGGATGGTGATAGATGAATCGGGAATACTTCAAGGGTTCACGTGGAAGGATCAATGGATCAAATTCTACTCCTACCCGACGGGTGGTGTGATTCCTACGAACAAGTGCGGTCCAAATACTAACCGTGACCCAGCCAAGGACTATAAGTTCGCTTGCACGTGCCTACCGGCTCAATATGCAAAGTCAGGTGGTTCTCTTAGCAAGAAGGCAAGGCTGGCAATTTCACTTGGATATGAAACAAGGAGAGCACTTTTAAGTTGGACAAGACGCTTCGAGATTATCTTGGGGATTGCTAGAGGCTTATTATATCTTCATGAAGATTCAAGACTAAGAATTATCCATAGAGATCTAAAGGCCAGCAATGTTCTATTGGATAATTCTTTGAACCCAAAGATTGCAGATTTTGGTATGGCTAGAATATTTAGAGGGGAGCAAACTGAAGCAAATACAAATCGTGTGGTTGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

9.46

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	29 - 123	2.6e-07	S-locus glycoprotein domain
PK_Tyr_Ser-Thr	PF07714	149 - 214	2.5e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	152 - 223	4.3e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	120
AccII	CGCG	2 cut(s)	64, 179
AciI	CCGC	5 cut(s)	88, 93, 120, 126, 309
AclWI	GGATC	2 cut(s)	258, 266
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	660
AcvI	CACGTG	2 cut(s)	243, 360
AfaI	GTAC	2 cut(s)	23, 124
AfiI	CCNNNNNNNGG	6 cut(s)	12, 13, 44, 104, 284, 337
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	144, 233, 525, 586
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	258, 266
AoxI	GGCC	2 cut(s)	94, 555
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp718I	GGTACC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	95, 102, 311
AsuC2I	CCSGG	3 cut(s)	7, 14, 106
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	102, 311
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	122
BbrPI	CACGTG	2 cut(s)	243, 360
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	2 cut(s)	35, 199
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BcnI	CCSGG	3 cut(s)	7, 14, 106
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	495, 615
BfmI	CTRYAG	1 cut(s)	51
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	3 cut(s)	7, 14, 106
Bme18I	GGWCC	2 cut(s)	102, 311
BmgT120I	GGNCC	3 cut(s)	95, 102, 311
BmiI	GGNNCC	2 cut(s)	11, 124
BmrFI	CCNGG	3 cut(s)	7, 14, 106
BpiI	GAAGAC	1 cut(s)	168
BpuMI	CCSGG	3 cut(s)	7, 14, 106
BsaAI	YACGTR	3 cut(s)	112, 243, 360
BsaJI	CCNNGG	2 cut(s)	98, 336
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 13, 44, 104, 284, 337
Bse118I	RCCGGY	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	98, 336
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	6 cut(s)	12, 13, 44, 104, 284, 337
BseMI	GCAATG	1 cut(s)	568
BseSI	GKGCMC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	64, 179
BshFI	GGCC	2 cut(s)	96, 557
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	5 cut(s)	7, 13, 105, 129, 368
BslI	CCNNNNNNNGG	6 cut(s)	12, 13, 44, 104, 284, 337
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	96, 557
Bsp1286I	GDGCHC	2 cut(s)	111, 451
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	195, 250, 258, 547
BspACI	CCGC	5 cut(s)	88, 93, 120, 126, 309
BspANI	GGCC	2 cut(s)	96, 557
BspFNI	CGCG	2 cut(s)	64, 179
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	11, 124
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	2 cut(s)	258, 266
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	98, 336
BssMI	GATC	4 cut(s)	195, 250, 258, 547
BssT1I	CCWWGG	2 cut(s)	98, 336
Bst4CI	ACNGT	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	21
BstBAI	YACGTR	3 cut(s)	112, 243, 360
BstC8I	GCNNGC	3 cut(s)	355, 417, 559
BstDEI	CTNAG	2 cut(s)	398, 530
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	64, 179
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	4 cut(s)	198, 253, 261, 550
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	4 cut(s)	195, 250, 258, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 416
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	5, 12, 104
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	2 cut(s)	64, 179
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	96, 557
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	355, 417, 559
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	3 cut(s)	95, 102, 311
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	22, 123
CspCI	CAANNNNNGTGG	1 cut(s)	639
CviAII	CATG	2 cut(s)	25, 515
CviJI	RGCY	7 cut(s)	96, 335, 371, 415, 501, 557, 614
CviKI_1	RGCY	7 cut(s)	96, 335, 371, 415, 501, 557, 614
CviQI	GTAC	2 cut(s)	22, 123
DdeI	CTNAG	2 cut(s)	398, 530
DpnI	GATC	4 cut(s)	197, 252, 260, 549
DpnII	GATC	4 cut(s)	195, 250, 258, 547
Eco130I	CCWWGG	2 cut(s)	98, 336
Eco32I	GATATC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	102, 311
Eco57I	CTGAAG	1 cut(s)	660
Eco72I	CACGTG	2 cut(s)	243, 360
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	98, 336
ErhI	CCWWGG	2 cut(s)	98, 336
FaeI	CATG	2 cut(s)	28, 518
FaiI	YATR	9 cut(s)	26, 345, 378, 435, 508, 516, 543, 611, 670
FatI	CATG	2 cut(s)	24, 514
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	2 cut(s)	495, 615
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	94
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	96, 557
HapII	CCGG	5 cut(s)	7, 13, 105, 129, 368
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	28, 518
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	4 cut(s)	188, 218, 292, 521
HpaII	CCGG	5 cut(s)	7, 13, 105, 129, 368
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	154, 240
Hpy188III	TCNNGA	4 cut(s)	222, 475, 515, 525
Hpy8I	GTNNAC	2 cut(s)	154, 240
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	184, 241, 400
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	3 cut(s)	111, 242, 359
HpyCH4V	TGCA	4 cut(s)	53, 357, 380, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 416
HpyF3I	CTNAG	2 cut(s)	398, 530
HpySE526I	ACGT	3 cut(s)	111, 242, 359
Hsp92II	CATG	2 cut(s)	28, 518
HspAI	GCGC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	195, 250, 258, 547
LmnI	GCTCC	1 cut(s)	631
LpnPI	CCDG	9 cut(s)	20, 26, 118, 142, 345, 372, 381, 401, 571
MaeI	CTAG	2 cut(s)	495, 615
MaeII	ACGT	3 cut(s)	111, 242, 359
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	197, 252, 260, 549
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	4 cut(s)	195, 250, 258, 547
MboII	GAAGA	3 cut(s)	173, 503, 530
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	111, 451
MluCI	AATT	5 cut(s)	139, 263, 420, 534, 577
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	440, 643
MnlI	CCTC	2 cut(s)	491, 620
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	5 cut(s)	7, 13, 105, 129, 368
MspR9I	CCNGG	3 cut(s)	7, 14, 106
MvnI	CGCG	2 cut(s)	64, 179
MwoI	GCNNNNNNNGC	2 cut(s)	377, 416
NciI	CCSGG	3 cut(s)	7, 14, 106
NdeII	GATC	4 cut(s)	195, 250, 258, 547
NlaIII	CATG	2 cut(s)	28, 518
NlaIV	GGNNCC	2 cut(s)	11, 124
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	514
PciI	ACATGT	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	218, 292, 521
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	182
PmaCI	CACGTG	2 cut(s)	243, 360
PmlI	CACGTG	2 cut(s)	243, 360
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	3 cut(s)	112, 243, 360
PscI	ACATGT	1 cut(s)	24
PspCI	CACGTG	2 cut(s)	243, 360
PspFI	CCCAGC	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	11, 124
PspPI	GGNCC	3 cut(s)	95, 102, 311
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	2 cut(s)	23, 124
RsaNI	GTAC	2 cut(s)	22, 123
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	4 cut(s)	195, 250, 258, 547
Sau96I	GGNCC	3 cut(s)	95, 102, 311
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	3 cut(s)	7, 14, 106
SduI	GDGCHC	2 cut(s)	111, 451
SetI	ASST	4 cut(s)	114, 245, 362, 391
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	2 cut(s)	102, 311
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	139, 263, 420, 534, 577
SsiI	CCGC	5 cut(s)	88, 93, 120, 126, 309
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	2 cut(s)	495, 615
StyD4I	CCNGG	3 cut(s)	5, 12, 104
StyI	CCWWGG	2 cut(s)	98, 336
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	3 cut(s)	114, 245, 362
TaqI	TCGA	1 cut(s)	474
TasI	AATT	5 cut(s)	139, 263, 420, 534, 577
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	218, 292, 521
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	174, 231, 450, 503, 531
VpaK11BI	GGWCC	2 cut(s)	102, 311
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	2 cut(s)	495, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.