Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

69967888 .. 69974892

Gene Structure 7005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGAATCTCAAATTGTCGATACCTCTACATCCCGATAATAAGAGCAAATTTGAGAACGACAAAGGATATCAAGCTTCGAGGTCGTCATCGAGGCTCGAGCCATATTCATCTCATGTTGATCTTGTCAACAAGAAAAACTCATTCCATAGGGATGGTGACAACTATGAGTGTCAAAAGTGGTTAGTTGAGAAGGATCCTCAACTCTATATGAATGCACGGCTTAGTGTCATCTCTCTGACGTATTATAGTTTTTGTTTAGCAAATGGGAGCTACACTGTGAGCCTTCATTTTTTAGAGATTATATTTGCTGATGATAACATATACAGCAGTTTGGGGAGGCACTTATTTGATGTTTACATCCAGAAAGCAGGTGGAGCCAGTAAGGCAGTGGTTAAGAAATTTACCGCCTCTGTGATCACTAGAACGCACGTCATCTTTAGAAAGAAGAAAAATTTGCTAGATCTAGTGGATCCAATGTCGGAAGCAACATCCACAACAAAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

19.28

Weight (kDa)

9.11

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	14 - 123	1.5e-14	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	4 cut(s)	191, 204, 467, 480
AcsI	RAATTY	3 cut(s)	50, 401, 454
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	2 cut(s)	77, 273
AluI	AGCT	2 cut(s)	77, 273
AlwI	GGATC	4 cut(s)	191, 204, 467, 480
Ama87I	CYCGRG	1 cut(s)	98
ApoI	RAATTY	3 cut(s)	50, 401, 454
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	98
BamHI	GGATCC	2 cut(s)	196, 472
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	417
BfaI	CTAG	3 cut(s)	423, 461, 467
BfuAI	ACCTGC	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	198, 379, 474
Bse1I	ACTGG	1 cut(s)	381
BseGI	GGATG	4 cut(s)	31, 160, 360, 491
BseNI	ACTGG	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	5 cut(s)	121, 196, 417, 463, 472
BspACI	CCGC	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	198, 379, 474
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	4 cut(s)	191, 204, 467, 480
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	5 cut(s)	121, 196, 417, 463, 472
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	31, 160, 360, 491
BstKTI	GATC	5 cut(s)	124, 199, 420, 466, 475
BstMBI	GATC	5 cut(s)	121, 196, 417, 463, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 386
BstX2I	RGATCY	3 cut(s)	196, 463, 472
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	3 cut(s)	196, 463, 472
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	31, 160, 360, 491
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	276, 396
BveI	ACCTGC	1 cut(s)	362
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	7 cut(s)	77, 97, 103, 223, 273, 285, 380
CviKI_1	RGCY	7 cut(s)	77, 97, 103, 223, 273, 285, 380
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	5 cut(s)	123, 198, 419, 465, 474
DpnII	GATC	5 cut(s)	121, 196, 417, 463, 472
Eco32I	GATATC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	71
FaeI	CATG	1 cut(s)	119
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	417
FokI	GGATG	4 cut(s)	18, 167, 347, 478
FspBI	CTAG	3 cut(s)	423, 461, 467
Hin1II	CATG	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	130, 358
Hpy188I	TCNGA	2 cut(s)	240, 484
Hpy188III	TCNNGA	2 cut(s)	35, 364
Hpy8I	GTNNAC	2 cut(s)	130, 358
HpyAV	CCTTC	2 cut(s)	187, 296
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	242, 432
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 386
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	2 cut(s)	242, 432
Hsp92II	CATG	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	5 cut(s)	121, 196, 417, 463, 472
LmnI	GCTCC	2 cut(s)	270, 377
LpnPI	CCDG	3 cut(s)	357, 377, 394
MaeI	CTAG	3 cut(s)	423, 461, 467
MaeII	ACGT	2 cut(s)	242, 432
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	123, 198, 419, 465, 474
MboI	GATC	5 cut(s)	121, 196, 417, 463, 472
MboII	GAAGA	1 cut(s)	460
MflI	RGATCY	3 cut(s)	196, 463, 472
MluCI	AATT	4 cut(s)	14, 50, 401, 454
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	6 cut(s)	36, 75, 87, 210, 333, 421
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	377, 386
NdeII	GATC	5 cut(s)	121, 196, 417, 463, 472
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	3 cut(s)	198, 379, 474
NmuCI	GTSAC	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	198, 379, 474
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	196, 463, 472
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	5 cut(s)	121, 196, 417, 463, 472
SetI	ASST	7 cut(s)	28, 79, 86, 245, 275, 376, 435
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	14, 50, 401, 454
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	3 cut(s)	423, 461, 467
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	245, 435
TaqI	TCGA	4 cut(s)	20, 80, 92, 99
TasI	AATT	4 cut(s)	14, 50, 401, 454
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	2 cut(s)	283, 396
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	99, 227, 278
TspRI	CASTG	2 cut(s)	283, 396
XapI	RAATTY	3 cut(s)	50, 401, 454
XcmI	CCANNNNNNNNNTGG	2 cut(s)	371, 388
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	3 cut(s)	423, 461, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.