Rroxscaffold_1G00049880
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
70190075 .. 70196032
5958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049880.1

Sequence Viewer

Length: 381 bp
ATGGAGAATGGGGGTGAAAAACCCATGCTTGAGCACCCATACTCGCCTAGCGTACTTACACCCTTTGTATGTGTAGCCATATTAGGAGCTGTGATATTGTTTAATGACATTCTCTTCGAAGAACCATGTCAATTGGATACACTTGCATCCCACAAATCAAATGGAGTCTACATTAACATAAAAATGTATGCTCGATCGGATCATGGGATAGCATTTGTGAAGCATAAATCGGGATGTATCTTCAGCGGTATAATTATAACTAATCAAAATTTACCCGACATTGAAGTAACCGATACGGTTACAGCTTCCAAAGGATTTGATTATAGCAACGTCTCGGGAAAGAGGCCAAGAAAGGAGGTGCGTTCTTATGCTGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

126

Amino Acids

13.84

Weight (kDa)

6.04

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccI GTMKAC 1 cut(s) 168
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 226
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 2 cut(s) 89, 305
AluI AGCT 2 cut(s) 89, 305
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AsuHPI GGTGA 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 1 cut(s) 368
BciVI GTATCC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 2 cut(s) 48, 379
BfuI GTATCC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 334
BmsI GCATC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 50
BseGI GGATG 2 cut(s) 146, 239
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 337
BsmBI CGTCTC 1 cut(s) 337
BsnI GGCC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 194, 199
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 346
BspPI GGATC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 117
BssMI GATC 2 cut(s) 194, 199
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 119
BstBI TTCGAA 1 cut(s) 117
BstF5I GGATG 2 cut(s) 146, 239
BstKTI GATC 2 cut(s) 197, 202
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 194, 199
BstMCI CGRYCG 1 cut(s) 197
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 146, 239
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 25, 126, 203
CviJI RGCY 5 cut(s) 77, 89, 305, 346, 378
CviKI_1 RGCY 5 cut(s) 77, 89, 305, 346, 378
CviQI GTAC 1 cut(s) 53
DpnI GATC 2 cut(s) 196, 201
DpnII GATC 2 cut(s) 194, 199
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 28, 129, 206
FatI CATG 3 cut(s) 24, 125, 202
FblI GTMKAC 1 cut(s) 168
FokI GGATG 2 cut(s) 133, 246
FspBI CTAG 2 cut(s) 48, 379
HaeIII GGCC 1 cut(s) 346
Hin1II CATG 3 cut(s) 28, 129, 206
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 231, 336
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 3 cut(s) 28, 129, 206
Kzo9I GATC 2 cut(s) 194, 199
LmnI GCTCC 1 cut(s) 86
LweI GCATC 1 cut(s) 155
MaeI CTAG 2 cut(s) 48, 379
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 286, 298
MalI GATC 2 cut(s) 196, 201
MboI GATC 2 cut(s) 194, 199
MboII GAAGA 3 cut(s) 106, 131, 232
MfeI CAATTG 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 131, 252, 268
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 2 cut(s) 336, 349
MseI TTAA 2 cut(s) 102, 174
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 246
MunI CAATTG 1 cut(s) 131
NdeII GATC 2 cut(s) 194, 199
NlaIII CATG 3 cut(s) 28, 129, 206
NspV TTCGAA 1 cut(s) 117
Ple19I CGATCG 1 cut(s) 197
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PsiI TTATAA 1 cut(s) 257
PvuI CGATCG 1 cut(s) 197
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 102, 174
Sau3AI GATC 2 cut(s) 194, 199
SchI GAGTC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 91, 307, 333, 360
SfaNI GCATC 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 131, 252, 268
SsiI CCGC 1 cut(s) 246
SspMI CTAG 2 cut(s) 48, 379
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 117, 193
TasI AATT 3 cut(s) 131, 252, 268
Tru1I TTAA 2 cut(s) 102, 174
Tru9I TTAA 2 cut(s) 102, 174
XapI RAATTY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 2 cut(s) 48, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.