Rroxscaffold_1G00053580

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
74502559 .. 74506863
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053580.1

Sequence Viewer

Length: 501 bp
ATGCTGAACATGATGAATTCCAATAGACCTACTAATGCTAATGGACTTCAAAATGATGGAAAGGGGGGACATGATCTAAGCGTATTTAAGTATGCGTCTATATTAGACGCCACTTGCAACTTCTACGATGAAAATAAGCTAGGAGAAGGGGTTTTGGACCTGTTTATAAGTGGTTACATGTCCCCTAAGTATGTTATGGGGGGGGAACTTTTCTATAAAATCGATGTATATAGTTTCGGAGTATTGCTGCTAGAAATTCTAAGTGGAAGGAAAAACAACAACTTATACAATGATGATCACACCCTCAATGTAGTTGGCTATGGTGGGCAAGTTCACGATTCTAAAATTCAAAATGAATATGTTCTTGTTTCGAGCATGGGCATTATAGAGAGAAGCATTACGTACGAAAGAAATGTGATCACAACTGCTGTAGGTGGGAATGGACAAGAAATTATTGCATCTATAAATGGTATCTCCAATTCTGGTTTTGATGGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

18.19

Weight (kDa)

4.92

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
AcsI RAATTY 3 cut(s) 16, 255, 345
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 2 cut(s) 50, 350
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 3 cut(s) 16, 255, 345
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 234
BccI CCATC 2 cut(s) 50, 485
BclI TGATCA 2 cut(s) 295, 417
BfaI CTAG 2 cut(s) 140, 251
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 467
Bsa29I ATCGAT 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
BseCI ATCGAT 1 cut(s) 222
BseXI GCAGC 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 222
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 2 cut(s) 81, 166
BsmFI GGGAC 2 cut(s) 81, 166
Bsp143I GATC 3 cut(s) 73, 295, 417
BspDI ATCGAT 1 cut(s) 222
BssMI GATC 3 cut(s) 73, 295, 417
BssNI GRCGYC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 77, 186, 260
BstKTI GATC 3 cut(s) 76, 298, 420
BstMBI GATC 3 cut(s) 73, 295, 417
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 429
BstSNI TACGTA 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 234
Bsu15I ATCGAT 1 cut(s) 222
BsuTUI ATCGAT 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 2 cut(s) 84, 116
Csp6I GTAC 1 cut(s) 403
CviAII CATG 4 cut(s) 10, 71, 178, 376
CviJI RGCY 2 cut(s) 139, 318
CviKI_1 RGCY 2 cut(s) 139, 318
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 77, 186, 260
DpnI GATC 3 cut(s) 75, 297, 419
DpnII GATC 3 cut(s) 73, 295, 417
Eco105I TACGTA 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 16
FaeI CATG 4 cut(s) 13, 74, 181, 379
FaqI GGGAC 2 cut(s) 81, 166
FatI CATG 4 cut(s) 9, 70, 177, 375
FbaI TGATCA 2 cut(s) 295, 417
Fnu4HI GCNGC 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 2 cut(s) 140, 251
GluI GCNGC 1 cut(s) 248
HgaI GACGC 2 cut(s) 84, 116
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 13, 74, 181, 379
HinfI GANTC 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 140, 261
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 117, 458
HpyF3I CTNAG 3 cut(s) 77, 186, 260
HpySE526I ACGT 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 13, 74, 181, 379
Ksp22I TGATCA 2 cut(s) 295, 417
Kzo9I GATC 3 cut(s) 73, 295, 417
LpnPI CCDG 2 cut(s) 173, 468
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 1 cut(s) 467
MaeI CTAG 2 cut(s) 140, 251
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 75, 297, 419
MboI GATC 3 cut(s) 73, 295, 417
MluCI AATT 5 cut(s) 16, 255, 345, 450, 478
MnlI CCTC 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 87, 499
NdeII GATC 3 cut(s) 73, 295, 417
NlaIII CATG 4 cut(s) 13, 74, 181, 379
NspI RCATGY 1 cut(s) 181
PciI ACATGT 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 338
Pfl23II CGTACG 1 cut(s) 402
PkrI GCNGC 1 cut(s) 249
Ppu21I YACGTR 1 cut(s) 402
PscI ACATGT 1 cut(s) 177
PsiI TTATAA 1 cut(s) 167
PspLI CGTACG 1 cut(s) 402
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 87, 499
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 3 cut(s) 73, 295, 417
Sau96I GGNCC 1 cut(s) 157
SetI ASST 5 cut(s) 31, 141, 162, 404, 436
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 157
SnaBI TACGTA 1 cut(s) 402
Sse9I AATT 5 cut(s) 16, 255, 345, 450, 478
SspMI CTAG 2 cut(s) 140, 251
TaiI ACGT 1 cut(s) 404
TaqI TCGA 2 cut(s) 222, 371
TasI AATT 5 cut(s) 16, 255, 345, 450, 478
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 2 cut(s) 87, 499
Tru9I TTAA 2 cut(s) 87, 499
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 3 cut(s) 29, 144, 369
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 3 cut(s) 16, 255, 345
XceI RCATGY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 140, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.