Rroxscaffold_1G00053600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
74542483 .. 74551811
9329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053600.1

Sequence Viewer

Length: 870 bp
ATGGCCTCCATAGATGCCGTCACAGCAAGCTTTGCTGCTTTTCTTACTCTCGTAGCCGGATGCGGGAAAGATTGGCGCCAGTACGAGCATCTTGAACTGGAACTCAAGATGATTGGTTTAAATACCATGTTATCATGGTCTTGGCTGGAAAGTCAGAACAGCCCCGAGCTAGGGTCTTTCACCCTTCATTGGTTTGGGGATTCTTGCGAATTGGAAGTTTGGAGAGACGGGGATCTTTGGTGGACTAGCGGAGAATTAAGAAATGGGGAATTTGAGTTATTAACATCCCTTATGAATTCAAGCAGGTTTGTTACGGTTTTAGCATGGTTTCAAATGAGAACGAAGACTCCTTCAGTTACAATTACAGTGCCTTTGATGATCAAAATGTTAGATCAGTCTGGGTGCTCAACACGGATAGGGAGCTTTATGATGTTAATTAATTATAACATTTCTATTGCGCGAGCAGGTGACTGTGATGGCTACAACACCGATGGAGGGTGCAGGACATGGAGAGGCCGGGACACTGGTTATTGTCCTCTGGGATCATTAGCTAATGATTTTGAGCTAATAAAAAACGGTTCCTTTAAAGCAATCAGTATGGACATGTCTATCAATTCAACATGGCTGGATACAAATCAAAGTCGCTATGGGAGCGGTCATCATTGCAAGGCTACTTGTTGGATGGACTGTGACTGCCTTGGTTTCGACTTTCTATATGATAATCAGACTGGATGTCGATTTTGGAATGTAAAGAATTCTCAGCTCCTTGAAGATCCAGATAGTTCTGCAACCAAATATATTAAACCAGGGCTAATCACTGCAAAGCTATCTCTTAGAAACAATGGCAAGTCTACTACTCTACTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

289

Amino Acids

32.5

Weight (kDa)

5.27

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AarI CACCTGC 1 cut(s) 455
Acc36I ACCTGC 2 cut(s) 294, 455
AccB1I GGYRCC 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 654
AccI GTMKAC 1 cut(s) 851
AccII CGCG 1 cut(s) 460
AciI CCGC 3 cut(s) 63, 249, 654
AclWI GGATC 3 cut(s) 240, 550, 767
AcsI RAATTY 3 cut(s) 269, 295, 754
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 5 cut(s) 63, 170, 171, 189, 495
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 5 cut(s) 95, 300, 332, 618, 770
AhdI GACNNNNNGTC 1 cut(s) 732
AjnI CCWGG 1 cut(s) 805
AloI GAACNNNNNNTCC 2 cut(s) 331, 363
AluBI AGCT 7 cut(s) 30, 169, 423, 551, 565, 763, 826
AluI AGCT 7 cut(s) 30, 169, 423, 551, 565, 763, 826
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 3 cut(s) 240, 550, 767
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 3, 514
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 3 cut(s) 269, 295, 754
AseI ATTAAT 1 cut(s) 438
AspLEI GCGC 2 cut(s) 78, 460
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 172, 479
AvaI CYCGRG 1 cut(s) 164
BanI GGYRCC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 470, 485, 676
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 807
BciVI GTATCC 1 cut(s) 622
BclI TGATCA 1 cut(s) 378
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 170, 246
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 2 cut(s) 294, 455
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 518, 807
BmeRI GACNNNNNGTC 1 cut(s) 732
BmeT110I CYCGRG 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 77, 580
BmrFI CCNGG 2 cut(s) 518, 807
BmsI GCATC 3 cut(s) 4, 50, 97
BpiI GAAGAC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 697, 806
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 170, 171, 189, 495
Bse1I ACTGG 4 cut(s) 79, 102, 529, 733
Bse3DI GCAATG 1 cut(s) 661
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 2 cut(s) 697, 806
BseGI GGATG 4 cut(s) 65, 284, 687, 737
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 5 cut(s) 63, 170, 171, 189, 495
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 4 cut(s) 79, 102, 529, 733
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 5, 516
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 57, 517
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 5 cut(s) 63, 170, 171, 189, 495
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 2 cut(s) 5, 516
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 5 cut(s) 232, 378, 391, 542, 772
BspACI CCGC 3 cut(s) 63, 249, 654
BspANI GGCC 2 cut(s) 5, 516
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 77, 580
BspMI ACCTGC 2 cut(s) 294, 455
BspPI GGATC 3 cut(s) 240, 550, 767
BspT107I GGYRCC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 4 cut(s) 79, 102, 529, 733
BssECI CCNNGG 2 cut(s) 697, 806
BssMI GATC 5 cut(s) 232, 378, 391, 542, 772
BssNI GRCGYC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 5 cut(s) 316, 367, 473, 578, 689
BstACI GRCGYC 1 cut(s) 76
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 28, 462
BstDEI CTNAG 2 cut(s) 759, 833
BstF5I GGATG 4 cut(s) 65, 284, 687, 737
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 78, 460
BstKTI GATC 5 cut(s) 235, 381, 394, 545, 775
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 5 cut(s) 232, 378, 391, 542, 772
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 651
BstNI CCWGG 1 cut(s) 807
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 516, 805
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 232, 772
BstYI RGATCY 2 cut(s) 232, 772
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 2 cut(s) 5, 516
BtsCI GGATG 4 cut(s) 65, 284, 687, 737
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 3 cut(s) 372, 522, 816
BveI ACCTGC 2 cut(s) 294, 455
Cac8I GCNNGC 2 cut(s) 28, 462
CfoI GCGC 2 cut(s) 78, 460
Csp6I GTAC 1 cut(s) 82
CviAII CATG 6 cut(s) 127, 135, 324, 507, 604, 621
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 759, 833
DinI GGCGCC 1 cut(s) 77
DpnI GATC 5 cut(s) 234, 380, 393, 544, 774
DpnII GATC 5 cut(s) 232, 378, 391, 542, 772
DraI TTTAAA 2 cut(s) 120, 586
DriI GACNNNNNGTC 1 cut(s) 732
Eam1105I GACNNNNNGTC 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 164
EcoRI GAATTC 2 cut(s) 295, 754
EcoRII CCWGG 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 697
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 6 cut(s) 130, 138, 327, 510, 607, 624
FaqI GGGAC 1 cut(s) 533
FatI CATG 6 cut(s) 126, 134, 323, 506, 603, 620
FauI CCCGC 1 cut(s) 56
FbaI TGATCA 1 cut(s) 378
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 72, 271, 694, 744
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 170, 246
GlaI GCGC 2 cut(s) 77, 459
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 5, 516
HapII CCGG 2 cut(s) 57, 517
HhaI GCGC 2 cut(s) 78, 460
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 6 cut(s) 130, 138, 327, 510, 607, 624
Hin6I GCGC 2 cut(s) 76, 458
HinP1I GCGC 2 cut(s) 76, 458
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 2 cut(s) 200, 346
HpaII CCGG 2 cut(s) 57, 517
HphI GGTGA 2 cut(s) 172, 479
Hpy166II GTNNAC 2 cut(s) 243, 852
Hpy188I TCNGA 2 cut(s) 156, 726
Hpy188III TCNNGA 3 cut(s) 92, 106, 776
Hpy8I GTNNAC 2 cut(s) 243, 852
HpyAV CCTTC 2 cut(s) 194, 360
HpyCH4III ACNGT 5 cut(s) 316, 367, 473, 578, 689
HpyCH4V TGCA 4 cut(s) 501, 666, 788, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 651
HpyF3I CTNAG 2 cut(s) 759, 833
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 6 cut(s) 130, 138, 327, 510, 607, 624
HspAI GCGC 2 cut(s) 76, 458
KasI GGCGCC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 5 cut(s) 232, 378, 391, 542, 772
LmnI GCTCC 3 cut(s) 420, 651, 768
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 3 cut(s) 4, 50, 97
MaeI CTAG 2 cut(s) 170, 246
MaeIII GTNAC 5 cut(s) 19, 310, 355, 467, 689
MalI GATC 5 cut(s) 234, 380, 393, 544, 774
MbiI CCGCTC 1 cut(s) 654
MboI GATC 5 cut(s) 232, 378, 391, 542, 772
MboII GAAGA 2 cut(s) 355, 782
MflI RGATCY 2 cut(s) 232, 772
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 9 cut(s) 209, 254, 269, 295, 360, 435, 439, 613, 754
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 4 cut(s) 16, 488, 506, 546
MseI TTAA 8 cut(s) 119, 257, 281, 434, 438, 585, 801, 864
MspI CCGG 2 cut(s) 57, 517
MspR9I CCNGG 2 cut(s) 518, 807
MvaI CCWGG 1 cut(s) 807
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 651
NarI GGCGCC 1 cut(s) 76
NciI CCSGG 1 cut(s) 518
NdeII GATC 5 cut(s) 232, 378, 391, 542, 772
NlaIII CATG 6 cut(s) 130, 138, 327, 510, 607, 624
NlaIV GGNNCC 2 cut(s) 77, 580
NmuCI GTSAC 3 cut(s) 19, 467, 689
NspI RCATGY 1 cut(s) 607
PacI TTAATTAA 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 455
PciI ACATGT 1 cut(s) 603
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 340
PluTI GGCGCC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 340
PscI ACATGT 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 438
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 805
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 2 cut(s) 77, 580
PsuI RGATCY 2 cut(s) 232, 772
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 8 cut(s) 119, 257, 281, 434, 438, 585, 801, 864
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 232, 378, 391, 542, 772
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 518, 807
SduI GDGCHC 1 cut(s) 407
SetI ASST 9 cut(s) 32, 171, 308, 425, 469, 553, 567, 765, 828
SfaNI GCATC 3 cut(s) 4, 50, 97
SfoI GGCGCC 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 9 cut(s) 209, 254, 269, 295, 360, 435, 439, 613, 754
SsiI CCGC 3 cut(s) 63, 249, 654
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 2 cut(s) 170, 246
StyD4I CCNGG 2 cut(s) 516, 805
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 5 cut(s) 316, 367, 473, 578, 689
TaqI TCGA 2 cut(s) 705, 736
TasI AATT 9 cut(s) 209, 254, 269, 295, 360, 435, 439, 613, 754
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 8 cut(s) 119, 257, 281, 434, 438, 585, 801, 864
Tru9I TTAA 8 cut(s) 119, 257, 281, 434, 438, 585, 801, 864
TscAI CASTG 3 cut(s) 372, 529, 823
TseFI GTSAC 3 cut(s) 19, 467, 689
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 3 cut(s) 19, 467, 689
TspDTI ATGAA 2 cut(s) 176, 308
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 3 cut(s) 372, 529, 823
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 3 cut(s) 269, 295, 754
XceI RCATGY 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 851
XspI CTAG 2 cut(s) 170, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.