Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

74553128 .. 74554979

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTACTTCATGCCATAGGGAGAAACTGTGCAAATGATGAGGGACCTAGGGTCTACTCTTGTACTCTCCGATACACACACACACGTCGCAGATATATACATATACATATACCTATACATATACATATACAAGTGAGATTATTCTATCTAACTTTAATCTCTTTGTATTGGCCTGATACAACTGAAGGCATTCTTCTTGATTGGCACAAGCGTTTCAGCATAATTGAAGGAATTGCTCAAGGATTGCTTTATTTGCACAAATACTCGAGAAAGAAAGTAGTTCATAGAGATTTAAAAGCTAGTAATGTACTACTTAATAAAAATATGAGTCCAAAAATTTCTGATTTTGGTATGGCAAGGATTTTCACACATAATGAACTTGAAGGAAATACAGGCAGGATTGTTAGGACACTAGTTGACTCAAGCCTCCCCAAAAGTTTAGACGATAGATGTTTCCTGTCCAGGAGGAGACGTCAAGGGAGTTCTATCCAGGTCAATGCTGGTGTTCAATGGTATCATCTTGATGCTATTGCACAAACTCGCCAAGTAAAGGCAACACCAGTAAAGGGCTTAGAAACAGGGCATGCATCATTCAAGAAGCTAACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

203

Amino Acids

23.48

Weight (kDa)

10.17

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	67 - 126	1.2e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	72 - 126	1.5e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	472
AfaI	GTAC	3 cut(s)	6, 64, 309
AfiI	CCNNNNNNNGG	2 cut(s)	550, 566
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	227, 383, 509, 595
AhdI	GACNNNNNGTC	1 cut(s)	50
AhlI	ACTAGT	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	461, 489
AluBI	AGCT	2 cut(s)	299, 601
AluI	AGCT	2 cut(s)	299, 601
Alw26I	GTCTC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	44
AvrII	CCTAGG	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	463, 491
BcoDI	GTCTC	1 cut(s)	463
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	3 cut(s)	48, 300, 413
BlnI	CCTAGG	1 cut(s)	47
Bme1390I	CCNGG	2 cut(s)	463, 491
Bme18I	GGWCC	1 cut(s)	44
BmeRI	GACNNNNNGTC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	463, 491
BmsI	GCATC	2 cut(s)	514, 596
BpuEI	CTTGAG	2 cut(s)	222, 406
BsaHI	GRCGYC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 457, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 566
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	2 cut(s)	463, 491
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	550, 566
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	550, 566
BsmAI	GTCTC	1 cut(s)	463
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	47
BssNI	GRCGYC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	463, 491
Bst4CI	ACNGT	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	571
BstMAI	GTCTC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	463, 491
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	461, 489
BsuRI	GGCC	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	5, 63, 308
CviAII	CATG	2 cut(s)	11, 584
CviJI	RGCY	5 cut(s)	172, 299, 426, 570, 601
CviKI_1	RGCY	5 cut(s)	172, 299, 426, 570, 601
CviQI	GTAC	3 cut(s)	5, 63, 308
DdeI	CTNAG	1 cut(s)	571
DraI	TTTAAA	1 cut(s)	294
DriI	GACNNNNNGTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	461, 489
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	2 cut(s)	14, 587
FalI	AAGNNNNNCTT	4 cut(s)	177, 209, 231, 263
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	2 cut(s)	10, 583
FblI	GTMKAC	1 cut(s)	54
FspBI	CTAG	3 cut(s)	48, 300, 413
HaeIII	GGCC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	2 cut(s)	14, 587
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	328, 419
Hpy166II	GTNNAC	2 cut(s)	55, 418
Hpy188I	TCNGA	2 cut(s)	71, 343
Hpy188III	TCNNGA	4 cut(s)	197, 267, 521, 595
Hpy8I	GTNNAC	2 cut(s)	55, 418
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	179, 221, 377
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	85, 472
HpyCH4V	TGCA	4 cut(s)	32, 256, 533, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	2 cut(s)	85, 472
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	2 cut(s)	14, 587
LweI	GCATC	2 cut(s)	514, 596
MaeI	CTAG	3 cut(s)	48, 300, 413
MaeII	ACGT	2 cut(s)	85, 472
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	3 cut(s)	222, 231, 336
MlyI	GAGTC	2 cut(s)	337, 413
MnlI	CCTC	3 cut(s)	34, 437, 459
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	3 cut(s)	155, 293, 315
MslI	CAYNNNNRTG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	463, 491
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	463, 491
MwoI	GCNNNNNNNGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	14, 587
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	1 cut(s)	587
PaeI	GCATGC	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	265
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	461
PleI	GAGTC	2 cut(s)	336, 413
PpsI	GAGTC	2 cut(s)	336, 413
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	461, 489
PspGI	CCWGG	2 cut(s)	461, 489
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
RsaI	GTAC	3 cut(s)	6, 64, 309
RsaNI	GTAC	3 cut(s)	5, 63, 308
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	155, 293, 315
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	337, 413
ScrFI	CCNGG	2 cut(s)	463, 491
SetI	ASST	7 cut(s)	49, 88, 115, 301, 475, 495, 603
SfaNI	GCATC	2 cut(s)	514, 596
Sfr274I	CTCGAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	237, 265, 421
SmoI	CTYRAG	3 cut(s)	237, 265, 421
SpeI	ACTAGT	1 cut(s)	412
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	3 cut(s)	222, 231, 336
SspMI	CTAG	3 cut(s)	48, 300, 413
StyD4I	CCNGG	2 cut(s)	461, 489
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	88, 475
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	222, 231, 336
TatI	WGTACW	2 cut(s)	62, 307
Tru1I	TTAA	3 cut(s)	155, 293, 315
Tru9I	TTAA	3 cut(s)	155, 293, 315
TspDTI	ATGAA	2 cut(s)	272, 390
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	48, 300, 413
ZraI	GACGTC	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.