Rroxscaffold_1G00054070

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
75388070 .. 75399015
10946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054070.1

Sequence Viewer

Length: 819 bp
ATGATTAAGGAAGGCTGCAAGAAACTTATAGAAGAGGAGGCGAGAGAAAATTGTGGCACGAGAAAGAGCACATTGGGCGACGGGATAATGAGATTGGAAGCAAAATTAGATGGGAGAGCCCTTCCCATTGAGTCGCCTCCGCAGGCCATGTTACCAAGGATCTTGGTTCTGGACAAGAAACAACGGCCTAAGTCGTTAAGGGTCCGAAGAAGAGGAAAAGGCCAAGTAGAGGAGGATGAAGAGGAGGATCTCGACTTGAAGAAACTGCCAAAAGATTACCCCGCACCGTTGAAATGCTTGTGGTTGTGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCAGATGGAAGATAAAGAGGAGAAAAAGAGTGCAACACGTTCTTCACTCTTCAAGATCGAACATTATCACCATGGCCAAAAAAAGTGGAAACCTAATATACCTATTCATGAAAATGATGGAAATCTAAGAAATGATATAAGCGTTTTTAGCTACACATCTGTCCTGGCTGCTACACTCAACTTCTCCTACGAAAACAAGCTCGGTGAAGGGGGGTTTGGATCTGGAAAATTGGTGACGGGACAAGAAATAGTTGTGAAGAAGCTTTCCAAAACTTCGGACCAAGGAGTTCTAGAGTTTAAGAATGAACTGATACTCATATATGAACTCCAACATACTAACCTTGTTCGGCTTTTTGGATTTTGCATTCATGGTGAAGAGAGGACGTTGATATATGAGTACATGCCAAACAAAAGTCTGGACTACTTTTTGTTCGGTAGGCAAGACACTATGATGATCCTAGAAGGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

272

Amino Acids

31.26

Weight (kDa)

8.5

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 178 - 259 4.3e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 179 - 264 3.1e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 282
AclWI GGATC 4 cut(s) 167, 255, 574, 796
AcoI YGGCCR 1 cut(s) 421
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 3 cut(s) 259, 292, 400
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AluBI AGCT 3 cut(s) 498, 547, 610
AluI AGCT 3 cut(s) 498, 547, 610
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 4 cut(s) 167, 255, 574, 796
AoxI GGCC 4 cut(s) 144, 185, 220, 421
ApeKI GCWGC 2 cut(s) 15, 515
AspS9I GGNCC 2 cut(s) 202, 625
AsuHPI GGTGA 4 cut(s) 407, 563, 592, 731
AvaII GGWCC 2 cut(s) 202, 625
BalI TGGCCA 1 cut(s) 423
BanII GRGCYC 1 cut(s) 121
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 2, 502
BccI CCATC 3 cut(s) 104, 346, 458
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 4 cut(s) 312, 638, 806, 817
BisI GCNGC 2 cut(s) 16, 516
BlsI GCNGC 2 cut(s) 17, 517
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 2 cut(s) 202, 625
BmgT120I GGNCC 2 cut(s) 202, 625
BmiI GGNNCC 2 cut(s) 203, 814
BmrFI CCNGG 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 3 cut(s) 155, 418, 628
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 3 cut(s) 155, 418, 628
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 4 cut(s) 50, 245, 257, 380
BseXI GCAGC 2 cut(s) 2, 502
BshFI GGCC 4 cut(s) 146, 187, 222, 423
BsiHKAI GWGCWC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 600
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 4 cut(s) 146, 187, 222, 423
Bsp1286I GDGCHC 2 cut(s) 71, 121
Bsp143I GATC 5 cut(s) 159, 247, 402, 566, 801
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 2 cut(s) 140, 282
BspANI GGCC 4 cut(s) 146, 187, 222, 423
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 203, 814
BspPI GGATC 4 cut(s) 167, 255, 574, 796
BssECI CCNNGG 3 cut(s) 155, 418, 628
BssMI GATC 5 cut(s) 159, 247, 402, 566, 801
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 3 cut(s) 155, 418, 628
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 5 cut(s) 27, 205, 234, 401, 717
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 189, 473
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 5 cut(s) 162, 250, 405, 569, 804
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 5 cut(s) 159, 247, 402, 566, 801
BstMWI GCNNNNNNNGC 2 cut(s) 75, 495
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 2, 502
BstX2I RGATCY 3 cut(s) 159, 247, 566
BstYI RGATCY 3 cut(s) 159, 247, 566
BsuRI GGCC 4 cut(s) 146, 187, 222, 423
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 202, 625
Csp6I GTAC 1 cut(s) 745
CspCI CAANNNNNGTGG 2 cut(s) 413, 448
CviAII CATG 5 cut(s) 148, 419, 455, 716, 748
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 2 cut(s) 189, 473
DpnI GATC 5 cut(s) 161, 249, 404, 568, 803
DpnII GATC 5 cut(s) 159, 247, 402, 566, 801
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 5 cut(s) 27, 205, 234, 401, 717
EarI CTCTTC 5 cut(s) 27, 205, 234, 401, 717
Eco130I CCWWGG 3 cut(s) 155, 418, 628
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 202, 625
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 3 cut(s) 155, 418, 628
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 3 cut(s) 155, 418, 628
FaeI CATG 5 cut(s) 151, 422, 458, 719, 751
FaqI GGGAC 1 cut(s) 600
FatI CATG 5 cut(s) 147, 418, 454, 715, 747
FauI CCCGC 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 16, 516
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 16, 516
FspBI CTAG 4 cut(s) 312, 638, 806, 817
GluI GCNGC 2 cut(s) 16, 516
HaeIII GGCC 4 cut(s) 146, 187, 222, 423
Hin1II CATG 5 cut(s) 151, 422, 458, 719, 751
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 1 cut(s) 131
HphI GGTGA 4 cut(s) 407, 563, 592, 731
Hpy188I TCNGA 3 cut(s) 206, 351, 625
Hpy188III TCNNGA 7 cut(s) 170, 251, 400, 455, 570, 638, 764
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 5, 131, 548, 803
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 2 cut(s) 385, 731
HpyCH4V TGCA 3 cut(s) 18, 380, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 495
HpyF3I CTNAG 2 cut(s) 189, 473
HpySE526I ACGT 2 cut(s) 385, 731
Hsp92II CATG 5 cut(s) 151, 422, 458, 719, 751
Kzo9I GATC 5 cut(s) 159, 247, 402, 566, 801
LmnI GCTCC 1 cut(s) 812
LpnPI CCDG 6 cut(s) 128, 155, 497, 524, 555, 749
Lsp1109I GCAGC 2 cut(s) 2, 502
MaeI CTAG 4 cut(s) 312, 638, 806, 817
MaeII ACGT 2 cut(s) 385, 731
MaeIII GTNAC 2 cut(s) 150, 580
MalI GATC 5 cut(s) 161, 249, 404, 568, 803
MboI GATC 5 cut(s) 159, 247, 402, 566, 801
MflI RGATCY 3 cut(s) 159, 247, 566
MhlI GDGCHC 2 cut(s) 71, 121
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 4 cut(s) 49, 104, 319, 575
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 700
Mox20I TGGCCA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 423
MseI TTAA 3 cut(s) 6, 197, 645
MslI CAYNNNNRTG 2 cut(s) 459, 797
Msp20I TGGCCA 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 2 cut(s) 75, 495
NcoI CCATGG 1 cut(s) 418
NdeII GATC 5 cut(s) 159, 247, 402, 566, 801
NlaIII CATG 5 cut(s) 151, 422, 458, 719, 751
NlaIV GGNNCC 2 cut(s) 203, 814
NmuCI GTSAC 1 cut(s) 580
NspI RCATGY 1 cut(s) 751
PagI TCATGA 1 cut(s) 454
PctI GAATGC 1 cut(s) 711
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 17, 517
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 203, 814
PspPI GGNCC 2 cut(s) 202, 625
PsuI RGATCY 3 cut(s) 159, 247, 566
PsyI GACNNNGTC 1 cut(s) 340
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 2 cut(s) 459, 797
SaqAI TTAA 3 cut(s) 6, 197, 645
SatI GCNGC 2 cut(s) 16, 516
Sau3AI GATC 5 cut(s) 159, 247, 402, 566, 801
Sau96I GGNCC 2 cut(s) 202, 625
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 2 cut(s) 71, 121
SetI ASST 8 cut(s) 388, 442, 451, 500, 549, 612, 690, 734
SinI GGWCC 2 cut(s) 202, 625
SmiMI CAYNNNNRTG 2 cut(s) 459, 797
Sse9I AATT 4 cut(s) 49, 104, 319, 575
SsiI CCGC 2 cut(s) 140, 282
SspMI CTAG 4 cut(s) 312, 638, 806, 817
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 3 cut(s) 155, 418, 628
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 2 cut(s) 388, 734
TaqI TCGA 2 cut(s) 252, 405
TasI AATT 4 cut(s) 49, 104, 319, 575
TatI WGTACW 1 cut(s) 744
Tru1I TTAA 3 cut(s) 6, 197, 645
Tru9I TTAA 3 cut(s) 6, 197, 645
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 15, 515
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 6 cut(s) 252, 443, 471, 666, 684, 704
Tth111I GACNNNGTC 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 202, 625
XbaI TCTAGA 1 cut(s) 637
XceI RCATGY 1 cut(s) 751
XspI CTAG 4 cut(s) 312, 638, 806, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.