Rroxscaffold_1G00054380

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
75796102 .. 75802455
6354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054380.1

Sequence Viewer

Length: 486 bp
ATGTTGGTATATGAGTATATGCCAAACAAAAGCTTGGACTACTTCTTGTTTGATTCAACCAGAGTGATGCTACTAGATTGGAATAAGCGTTTCGGTATAATAGAAGGAATCGCTCAAGGATTGCTTTATTTGCACAAATACTCGAGAGTGAGAGTAATTCATAGAGATTTGAAAGCTAGTAACATACTACTTGATGAAAACATGATTCCCAGAATTTCCGACTTTGGGATGGCAAGGATTTTCTCGCACAATGAACCACAAGCAAATACTAACGGGCGTCTGAAAATTAATGTGGATAGGGCATTTAACACTGAAGATGGAAGTGATGGAGGTATTGGAGTAGTAGTTCGGAAAGATGTTGGCATTAGTATTGCTGCTTTGGCTAAATCTGAGAATGATGACCAAGGTTGCTGTCACCTCTTACTAGGGTTGGAACAGAAAGAACATCCTCACCTCACCCCCATTGTGCAAAGAGCTGGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.24

Weight (kDa)

7.01

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 95 3.3e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 86 1.2e-15 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 57, 172
AloI GAACNNNNNNTCC 2 cut(s) 330, 362
AluBI AGCT 3 cut(s) 33, 176, 476
AluI AGCT 3 cut(s) 33, 176, 476
Ama87I CYCGRG 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 1 cut(s) 463
AseI ATTAAT 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 407, 443, 448
AvaI CYCGRG 1 cut(s) 142
BbvI GCAGC 1 cut(s) 361
BccI CCATC 3 cut(s) 223, 311, 320
BfaI CTAG 3 cut(s) 74, 177, 425
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 142
BmsI GCATC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 2 cut(s) 234, 445
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 403
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 234, 445
BstMWI GCNNNNNNNGC 2 cut(s) 130, 380
BstV1I GCAGC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 234, 445
BtsIMutI CAGTG 1 cut(s) 309
CseI GACGC 1 cut(s) 266
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 33, 176, 383, 476
CviKI_1 RGCY 4 cut(s) 33, 176, 383, 476
DdeI CTNAG 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 205
FaiI YATR 8 cut(s) 10, 12, 18, 20, 98, 162, 185, 203
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 2 cut(s) 241, 432
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 3 cut(s) 74, 177, 425
GluI GCNGC 1 cut(s) 375
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 3 cut(s) 53, 108, 205
HphI GGTGA 3 cut(s) 407, 443, 448
Hpy188I TCNGA 4 cut(s) 220, 282, 351, 391
Hpy188III TCNNGA 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 133, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 380
HpyF3I CTNAG 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 205
LpnPI CCDG 3 cut(s) 73, 223, 462
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 74, 177, 425
MaeIII GTNAC 2 cut(s) 179, 413
MboII GAAGA 1 cut(s) 326
MluCI AATT 3 cut(s) 156, 213, 285
MmeI TCCRAC 2 cut(s) 243, 411
MnlI CCTC 4 cut(s) 323, 428, 459, 464
MseI TTAA 3 cut(s) 288, 306, 484
MwoI GCNNNNNNNGC 2 cut(s) 130, 380
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 142
PfeI GAWTC 3 cut(s) 53, 108, 205
PkrI GCNGC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 288
SaqAI TTAA 3 cut(s) 288, 306, 484
SatI GCNGC 1 cut(s) 375
SetI ASST 7 cut(s) 35, 178, 334, 409, 420, 456, 478
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 142
SlaI CTCGAG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 114, 142
SmoI CTYRAG 2 cut(s) 114, 142
Sse9I AATT 3 cut(s) 156, 213, 285
SspMI CTAG 3 cut(s) 74, 177, 425
StyI CCWWGG 1 cut(s) 403
TaqI TCGA 1 cut(s) 143
TasI AATT 3 cut(s) 156, 213, 285
TfiI GAWTC 3 cut(s) 53, 108, 205
Tru1I TTAA 3 cut(s) 288, 306, 484
Tru9I TTAA 3 cut(s) 288, 306, 484
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 149, 210, 267
TspRI CASTG 1 cut(s) 316
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 142
XspI CTAG 3 cut(s) 74, 177, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.