Rroxscaffold_1G00060230

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
82436610 .. 82444773
8164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060230.1

Sequence Viewer

Length: 291 bp
ATGGTTACATTTGCCAGTGCTTGGAAGGTTATGAAGGGAACCCATACCACCCAGATGGGTGACAAGACGATACGTAGTATAAACTGCTATAAGTCATGGAGGCACTATGGAGGCACTGTGGAGACAACAAAAATCTTTTCCACAGAAGAACTTGAGAAGGCAACAAACAATTACCACGAGAGTAGAATCCTTGGAGAAGGAGGCTATGGAACAGTTTACAAAGGAATACTACCAGATGACAAAGTGGTGGCCATAAAGAAGTCAAAAAAGTGGTGCCCCAACCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

9.52

Isoelectric Point (pI)

23.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 273
BauI CACGAG 1 cut(s) 176
BccI CCATC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 40, 275
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 278
BshFI GGCC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 278
BspANI GGCC 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 40, 275
BspT107I GGYRCC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 190
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 190
Bst2BI CACGAG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 118, 214
BstBAI YACGTR 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 278
BstSNI TACGTA 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 22, 114
CviAII CATG 1 cut(s) 96
CviJI RGCY 2 cut(s) 204, 251
CviKI_1 RGCY 2 cut(s) 204, 251
EaeI YGGCCR 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 99
FaiI YATR 8 cut(s) 32, 45, 80, 90, 97, 108, 207, 254
FatI CATG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 1 cut(s) 99
HinfI GANTC 1 cut(s) 186
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 4 cut(s) 19, 28, 151, 191
HpyCH4III ACNGT 2 cut(s) 118, 214
HpyCH4IV ACGT 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 1 cut(s) 99
LpnPI CCDG 3 cut(s) 28, 65, 246
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 4, 59
MboII GAAGA 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 278
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 251
MnlI CCTC 3 cut(s) 93, 104, 194
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 251
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 40, 275
NmuCI GTSAC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 40, 275
RseI CAYNNNNRTG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 278
SetI ASST 2 cut(s) 30, 76
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 74
Sse9I AATT 1 cut(s) 169
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 118, 214
TaiI ACGT 1 cut(s) 76
TasI AATT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 2 cut(s) 22, 121
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 2 cut(s) 22, 121
Van91I CCANNNNNTGG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.