Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

83022139 .. 83025230

Gene Structure 3092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTATGGCGTAAAGGGGTTTGTGGTTGGGCAACAATTGGTGGTATAGACTTTATGGCAATGCGATTAGGCTATTACGGAGTTGAGTACAAGTTAGGTTTTTGTCCGAATGGTCCTGATTGCCGATATACACCAGTTCCTTCGGATTCAATGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACAGTTGTTGAAGTGATCCCTGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAGGACCTTTGAACCATTACCTGCTGAGCCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGAGCAAAAGCGAGCCTGCCGAAACTGGTTGGATCTCCCGGAGGACCTAACGGCGTCAATATTTTCAAGGTTGAAAGCCACAGAGATCGTGCATGATTGTCAGCTTGTGTGCAAGAGATGGTTGAAAATCTGCAAGGTTAACCCTCTGGTATGGCGAACCATCGACATGGATCATCACCTTATGGACGATTTCATCTACGGCAGCATGGAGCATATGTGCCGCGACCTCATTGATCGTAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTCCATAACTGATAGTAGTTCATGTGGAATCAGACGCCTACGATTGGAAGATTGTCCCCAGATAACAGATGAGGGATTGTGTGGAGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

273

Amino Acids

31.01

Weight (kDa)

5.14

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	153 - 200	3.2e-10	F-box-like
F-box	PF00646	153 - 192	1e-05	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	710
AccII	CGCG	1 cut(s)	654
AciI	CCGC	1 cut(s)	652
AclI	AACGTT	1 cut(s)	696
AclWI	GGATC	3 cut(s)	268, 471, 609
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	2 cut(s)	485, 763
AfaI	GTAC	2 cut(s)	89, 314
AfiI	CCNNNNNNNGG	1 cut(s)	772
AflII	CTTAAG	1 cut(s)	725
AgsI	TTSAA	6 cut(s)	150, 269, 377, 498, 505, 556
AluBI	AGCT	4 cut(s)	202, 298, 535, 672
AluI	AGCT	4 cut(s)	202, 298, 535, 672
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	3 cut(s)	268, 471, 609
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	4 cut(s)	113, 369, 419, 475
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	170, 260, 599
AvaII	GGWCC	4 cut(s)	113, 369, 419, 475
BanI	GGYRCC	1 cut(s)	710
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	2 cut(s)	543, 599
BceAI	ACGGC	2 cut(s)	498, 646
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	212, 820
BfrI	CTTAAG	1 cut(s)	725
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	634, 652
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	635, 653
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	4 cut(s)	113, 369, 419, 475
BmgT120I	GGNCC	4 cut(s)	113, 369, 419, 475
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	2 cut(s)	485, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse1I	ACTGG	4 cut(s)	134, 235, 421, 461
Bse3DI	GCAATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	5 cut(s)	155, 165, 270, 381, 387
BseNI	ACTGG	4 cut(s)	134, 235, 421, 461
BseXI	GCAGC	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	1 cut(s)	818
BshNI	GGYRCC	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	818
Bsp143I	GATC	5 cut(s)	273, 463, 516, 601, 664
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	652
BspANI	GGCC	1 cut(s)	818
BspCNI	CTCAG	5 cut(s)	156, 166, 271, 382, 388
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	3 cut(s)	268, 471, 609
BspT107I	GGYRCC	1 cut(s)	710
BspTI	CTTAAG	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	134, 235, 421, 461
BssMI	GATC	5 cut(s)	273, 463, 516, 601, 664
BssNI	GRCGYC	2 cut(s)	485, 763
Bst4CI	ACNGT	1 cut(s)	262
BstACI	GRCGYC	2 cut(s)	485, 763
BstAFI	CTTAAG	1 cut(s)	725
BstC8I	GCNNGC	4 cut(s)	222, 402, 444, 448
BstDEI	CTNAG	5 cut(s)	164, 174, 279, 390, 396
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	276, 466, 519, 604, 667
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	5 cut(s)	273, 463, 516, 601, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	818
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	228, 360
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	4 cut(s)	222, 402, 444, 448
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	4 cut(s)	113, 369, 419, 475
CseI	GACGC	2 cut(s)	474, 771
Csp6I	GTAC	2 cut(s)	88, 313
CviAII	CATG	4 cut(s)	524, 598, 637, 750
CviQI	GTAC	2 cut(s)	88, 313
DdeI	CTNAG	5 cut(s)	164, 174, 279, 390, 396
DpnI	GATC	5 cut(s)	275, 465, 518, 603, 666
DpnII	GATC	5 cut(s)	273, 463, 516, 601, 664
Eco32I	GATATC	2 cut(s)	332, 691
Eco47I	GGWCC	4 cut(s)	113, 369, 419, 475
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	2 cut(s)	369, 475
EcoRV	GATATC	2 cut(s)	332, 691
FaeI	CATG	4 cut(s)	527, 601, 640, 753
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	4 cut(s)	523, 597, 636, 749
FauNDI	CATATG	2 cut(s)	406, 645
Fnu4HI	GCNGC	2 cut(s)	634, 652
Fsp4HI	GCNGC	2 cut(s)	634, 652
FspBI	CTAG	2 cut(s)	212, 820
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	2 cut(s)	634, 652
HaeIII	GGCC	1 cut(s)	818
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	2 cut(s)	474, 771
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	2 cut(s)	485, 763
Hin1II	CATG	4 cut(s)	527, 601, 640, 753
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	3 cut(s)	146, 289, 756
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	3 cut(s)	170, 260, 599
Hpy166II	GTNNAC	2 cut(s)	161, 571
Hpy188I	TCNGA	6 cut(s)	108, 145, 175, 207, 329, 761
Hpy188III	TCNNGA	2 cut(s)	116, 197
Hpy8I	GTNNAC	2 cut(s)	161, 571
HpyAV	CCTTC	2 cut(s)	150, 239
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	4 cut(s)	404, 523, 543, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	5 cut(s)	164, 174, 279, 390, 396
HpySE526I	ACGT	1 cut(s)	696
Hsp92I	GRCGYC	2 cut(s)	485, 763
Hsp92II	CATG	4 cut(s)	527, 601, 640, 753
HspAI	GCGC	1 cut(s)	703
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	273, 463, 516, 601, 664
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	212, 820
MaeII	ACGT	1 cut(s)	696
MalI	GATC	5 cut(s)	275, 465, 518, 603, 666
MboI	GATC	5 cut(s)	273, 463, 516, 601, 664
MboII	GAAGA	3 cut(s)	185, 339, 788
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	159, 466, 585, 668, 793
MseI	TTAA	2 cut(s)	570, 726
MslI	CAYNNNNRTG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	470
NdeI	CATATG	2 cut(s)	406, 645
NdeII	GATC	5 cut(s)	273, 463, 516, 601, 664
NlaIII	CATG	4 cut(s)	527, 601, 640, 753
NlaIV	GGNNCC	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	146, 756
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	635, 653
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	2 cut(s)	369, 475
Psp1406I	AACGTT	1 cut(s)	696
Psp5II	RGGWCCY	2 cut(s)	369, 475
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	4 cut(s)	113, 369, 419, 475
PspPPI	RGGWCCY	2 cut(s)	369, 475
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	2 cut(s)	89, 314
RsaNI	GTAC	2 cut(s)	88, 313
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	570, 726
SatI	GCNGC	2 cut(s)	634, 652
Sau3AI	GATC	5 cut(s)	273, 463, 516, 601, 664
Sau96I	GGNCC	4 cut(s)	113, 369, 419, 475
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	470
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	4 cut(s)	113, 369, 419, 475
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	652
SspI	AATATT	1 cut(s)	492
SspMI	CTAG	2 cut(s)	212, 820
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	3 cut(s)	243, 594, 687
TasI	AATT	1 cut(s)	36
TatI	WGTACW	2 cut(s)	87, 312
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	2 cut(s)	146, 756
Tru1I	TTAA	2 cut(s)	570, 726
Tru9I	TTAA	2 cut(s)	570, 726
TscAI	CASTG	2 cut(s)	235, 360
TseI	GCWGC	1 cut(s)	633
TspDTI	ATGAA	2 cut(s)	613, 738
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	235, 360
Vha464I	CTTAAG	1 cut(s)	725
VpaK11BI	GGWCC	4 cut(s)	113, 369, 419, 475
XspI	CTAG	2 cut(s)	212, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.