Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

86859532 .. 86861417

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAACTCATAGGCACCATTCCTCCGCAGCTAAGCAACCTTTCTTTTTTTGTTAGGCTAAGATTTAAAAATAACAGTTTTCATGGTACCTTGCCTGAGTTGCCTCTAGAATTAGGTCATTTGCGTAGATTGAAAGGGATTGATTTCACATACAACAATTTTAAAGGAATCATTCCGTCATGGTTTGGGTCCTTATTTAAACTTCAAGCCTTATCTCTTTATGGTAATAAATTTTCAGGTTCCATATCAACGGCCATCTTCAACTTATCAGCACTCGAAATAATTAATTTGAGCTTTAACCGTCTATCAGGTCCACTTCCATCCAAATGGGCGCAATGCAAACAACTTTCTATATTAGCTTTGGAGACGAACAATTTCAGTGAAAGCATACCCACCAATATTGGCAACCTAACCCAAATAAGGGTGATATCCCTTCGAAGAAACTATTTGACAGGTACTATACCACATGAGATTAGTCATGTTCCAAATTTAGAGACACTCCAGCTCGATTTTAATAATCTCAATGACATCGTCCCACCCTCAATCTTCAATATGTCCACAATAACAGTAGTAGCGCTTGTTAACAATCAACTCTCAGGTACCCTTCCAAGAAATATAGGCCTTGGACTTCCCAGCCTACGAGAGCTCTATCTATTTGAAAATATTTTGAGCTGGTGTATATCAAAAAGTGGGAAAATTTTGAGCTCTACACCAGCTTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

26.83

Weight (kDa)

9.51

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	111 - 219	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	115 - 174	2.2e-07	Leucine rich repeat
LRR_8	PF13855	162 - 221	9.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	86, 599
AccB1I	GGYRCC	3 cut(s)	14, 86, 599
AccB7I	CCANNNNNTGG	1 cut(s)	719
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	3 cut(s)	230, 487, 696
AfaI	GTAC	3 cut(s)	88, 457, 601
AfeI	AGCGCT	1 cut(s)	576
AfiI	CCNNNNNNNGG	3 cut(s)	420, 421, 719
AgsI	TTSAA	5 cut(s)	133, 206, 262, 550, 659
AluBI	AGCT	8 cut(s)	31, 294, 359, 505, 646, 672, 705, 716
AluI	AGCT	8 cut(s)	31, 294, 359, 505, 646, 672, 705, 716
Alw21I	GWGCWC	2 cut(s)	648, 707
Alw26I	GTCTC	2 cut(s)	359, 488
Aor51HI	AGCGCT	1 cut(s)	576
AoxI	GGCC	2 cut(s)	252, 619
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	3 cut(s)	230, 487, 696
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	374
Asp718I	GGTACC	2 cut(s)	86, 599
AspLEI	GCGC	2 cut(s)	334, 577
AspS9I	GGNCC	2 cut(s)	189, 311
AsuHPI	GGTGA	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	189, 311
BanI	GGYRCC	3 cut(s)	14, 86, 599
BanII	GRGCYC	2 cut(s)	648, 707
Bbv12I	GWGCWC	2 cut(s)	648, 707
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	263, 328
BceAI	ACGGC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	359, 488
BfaI	CTAG	2 cut(s)	107, 724
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	1 cut(s)	29
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	189, 311
BmgT120I	GGNCC	2 cut(s)	189, 311
BmiI	GGNNCC	5 cut(s)	16, 88, 190, 241, 601
BpmI	CTGGAG	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	622
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 421, 719
Bse3DI	GCAATG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	622
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	3 cut(s)	420, 421, 719
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	87, 609
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	2 cut(s)	254, 621
BshNI	GGYRCC	3 cut(s)	14, 86, 599
BsiHKAI	GWGCWC	2 cut(s)	648, 707
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	420, 421, 719
BsmAI	GTCTC	2 cut(s)	359, 488
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	2 cut(s)	254, 621
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	648, 707
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	254, 621
BspCNI	CTCAG	2 cut(s)	88, 608
BspLI	GGNNCC	5 cut(s)	16, 88, 190, 241, 601
BspT104I	TTCGAA	1 cut(s)	436
BspT107I	GGYRCC	3 cut(s)	14, 86, 599
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	622
Bst4CI	ACNGT	3 cut(s)	77, 302, 568
BstBI	TTCGAA	1 cut(s)	436
BstDEI	CTNAG	4 cut(s)	32, 59, 96, 595
BstF5I	GGATG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	2 cut(s)	334, 577
BstMAI	GTCTC	2 cut(s)	359, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	254, 621
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	385
CfoI	GCGC	2 cut(s)	334, 577
Cfr13I	GGNCC	2 cut(s)	189, 311
Csp6I	GTAC	3 cut(s)	87, 456, 600
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	4 cut(s)	83, 180, 467, 479
CviQI	GTAC	3 cut(s)	87, 456, 600
DdeI	CTNAG	4 cut(s)	32, 59, 96, 595
DraI	TTTAAA	3 cut(s)	67, 163, 199
EaeI	YGGCCR	1 cut(s)	252
Ecl136II	GAGCTC	2 cut(s)	646, 705
Eco130I	CCWWGG	1 cut(s)	622
Eco147I	AGGCCT	1 cut(s)	621
Eco24I	GRGCYC	2 cut(s)	648, 707
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	189, 311
Eco47III	AGCGCT	1 cut(s)	576
Eco53kI	GAGCTC	2 cut(s)	646, 705
EcoICRI	GAGCTC	2 cut(s)	646, 705
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	648, 707
ErhI	CCWWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	4 cut(s)	86, 183, 470, 482
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	4 cut(s)	82, 179, 466, 478
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	2 cut(s)	648, 707
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	107, 724
GlaI	GCGC	2 cut(s)	333, 576
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	254, 621
HhaI	GCGC	2 cut(s)	334, 577
Hin1II	CATG	4 cut(s)	86, 183, 470, 482
Hin6I	GCGC	2 cut(s)	332, 575
HinP1I	GCGC	2 cut(s)	332, 575
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	1 cut(s)	168
HpaI	GTTAAC	1 cut(s)	583
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	3 cut(s)	314, 558, 583
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	314, 558, 583
HpyAV	CCTTC	2 cut(s)	443, 614
HpyCH4III	ACNGT	3 cut(s)	77, 302, 568
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	4 cut(s)	32, 59, 96, 595
Hsp92II	CATG	4 cut(s)	86, 183, 470, 482
HspAI	GCGC	2 cut(s)	332, 575
KpnI	GGTACC	2 cut(s)	90, 603
KspAI	GTTAAC	1 cut(s)	583
LpnPI	CCDG	8 cut(s)	108, 222, 294, 438, 515, 582, 646, 658
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	107, 724
MboII	GAAGA	3 cut(s)	250, 450, 538
MhlI	GDGCHC	2 cut(s)	648, 707
MluCI	AATT	8 cut(s)	110, 157, 230, 282, 286, 373, 487, 696
MnlI	CCTC	3 cut(s)	33, 114, 550
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	7 cut(s)	66, 162, 198, 285, 297, 513, 582
MslI	CAYNNNNRTG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	86, 183, 470, 482
NlaIV	GGNNCC	5 cut(s)	16, 88, 190, 241, 601
NspV	TTCGAA	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	189
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	2 cut(s)	648, 707
Psp5II	RGGWCCY	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	632
PspN4I	GGNNCC	5 cut(s)	16, 88, 190, 241, 601
PspPI	GGNCC	2 cut(s)	189, 311
PspPPI	RGGWCCY	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	530
RsaI	GTAC	3 cut(s)	88, 457, 601
RsaNI	GTAC	3 cut(s)	87, 456, 600
RseI	CAYNNNNRTG	1 cut(s)	325
SacI	GAGCTC	2 cut(s)	648, 707
SaqAI	TTAA	7 cut(s)	66, 162, 198, 285, 297, 513, 582
SatI	GCNGC	1 cut(s)	29
Sau96I	GGNCC	2 cut(s)	189, 311
SduI	GDGCHC	2 cut(s)	648, 707
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	2 cut(s)	189, 311
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	8 cut(s)	110, 157, 230, 282, 286, 373, 487, 696
SseBI	AGGCCT	1 cut(s)	621
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	2 cut(s)	400, 664
SspMI	CTAG	2 cut(s)	107, 724
SstI	GAGCTC	2 cut(s)	648, 707
StuI	AGGCCT	1 cut(s)	621
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	3 cut(s)	77, 302, 568
TaqI	TCGA	3 cut(s)	276, 436, 507
TasI	AATT	8 cut(s)	110, 157, 230, 282, 286, 373, 487, 696
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	7 cut(s)	66, 162, 198, 285, 297, 513, 582
Tru9I	TTAA	7 cut(s)	66, 162, 198, 285, 297, 513, 582
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	189, 311
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	3 cut(s)	230, 487, 696
XbaI	TCTAGA	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	2 cut(s)	107, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.