Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

87007821 .. 87009634

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGAGCACTGGGTTGTTCGTCGTCTACTCTTGTTGTATGGCCGCTAGCTGCTTATCTATGGTATCACCACAAACCAACATCACCATAGACCAATCTGCTCTTTCTGCTCTCAAAGTCCATATCACCGGTGACCCTCGTAACTTGATCTTTACTAACTGGTCAACCACCATTACCGTTTGCAATCGGGTTGGCGTTACTTGTGGTGCACGCCACCTTAGAGTCACAGCCTTGAACCTCTCCTACTTTGGTCTCCAAGGCACAATTCCTCCGCAGCTAGGCAACCTATCGTTTCTTGTTGATATTGACTCACGGTCCCTTGCCCCCTGTCTTCAACATGTCTTCTTTGGTTACTTTGACTCTATATGGAAACAACTTGGAGGGCAGACTTCCGGAAAATATGTGCCGAATCTTCCTCATATTCAAGCTTTGAATTTCGGTGATAACGGGCTTGAAGGTCCACTGCCATCCATATTTTGGCAATGCAAACAACTTGTTGATTTACTATTGGGGCGTAACAAGTTCAGTGGAAGCATACCCAAAAATATTGTGAACGCAACCCAGTTAAAGCAGGTTGATGTTAGAGAAAACGATTTGACAGGGACATGTACTATACCATATGAGATTGGTCGTCTTCCAAATTTAGTGCTATTGGATCTCGGTGTTAATAATCTGAATGGTCACATCCCAACCACAATCTTCAACAATTCCATAATAGTGACCATTGGTCTTGTTAGTAATCAGCTCTCGGGCAACCTTCCAACAAACATAGGTGTTGGCCTTCCAAACCTACAACATTTCTTCCTAGGAGAAAATAAACTCAGCGGAGAAATCCCCAAATCCATGTCCAATGCTTCTCAGCTCATGAACCTAGCATTGGGAGATAACTTTGATTCAGGCTTTATTCCTAGCACACTGTGTGCCTTAACAAACCTTGAAATGGTTTCCTTATTTAAGAATAATTTAACTATTGATACTAGTACTCCGAGTAAATGTTCTCCCTTGCTTGGCAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

339

Amino Acids

36.62

Weight (kDa)

6.97

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	392
AciI	CCGC	3 cut(s)	45, 272, 825
AclWI	GGATC	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	433, 640
AdeI	CACNNNGTG	2 cut(s)	918, 920
AfaI	GTAC	2 cut(s)	610, 982
AfiI	CCNNNNNNNGG	5 cut(s)	278, 477, 877, 940, 1007
AflIII	ACRYGT	2 cut(s)	337, 605
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	7 cut(s)	235, 335, 425, 433, 455, 703, 938
AhdI	GACNNNNNGTC	2 cut(s)	313, 726
AhlI	ACTAGT	1 cut(s)	977
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 860, 892
AluBI	AGCT	5 cut(s)	51, 277, 428, 745, 862
AluI	AGCT	5 cut(s)	51, 277, 428, 745, 862
Alw21I	GWGCWC	2 cut(s)	11, 211
Alw26I	GTCTC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	663
Ama87I	CYCGRG	1 cut(s)	748
Aor13HI	TCCGGA	1 cut(s)	392
AoxI	GGCC	2 cut(s)	42, 778
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	51, 274
ApoI	RAATTY	2 cut(s)	433, 640
AsiGI	ACCGGT	1 cut(s)	128
AspA2I	CCTAGG	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	315, 458
AsuHPI	GGTGA	5 cut(s)	60, 76, 118, 143, 452
AsuNHI	GCTAGC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	748
AvaII	GGWCC	2 cut(s)	315, 458
AvrII	CCTAGG	1 cut(s)	805
BaeGI	GKGCMC	1 cut(s)	211
BbsI	GAAGAC	3 cut(s)	323, 334, 626
Bbv12I	GWGCWC	2 cut(s)	11, 211
BbvI	GCAGC	2 cut(s)	38, 286
BccI	CCATC	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	6 cut(s)	48, 278, 806, 872, 909, 978
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	3 cut(s)	45, 52, 275
BlnI	CCTAGG	1 cut(s)	805
BlsI	GCNGC	3 cut(s)	46, 53, 276
BmcAI	AGTACT	1 cut(s)	982
Bme18I	GGWCC	2 cut(s)	315, 458
BmeRI	GACNNNNNGTC	2 cut(s)	313, 726
BmeT110I	CYCGRG	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	315, 458
BmiI	GGNNCC	1 cut(s)	317
BmrI	ACTGGG	2 cut(s)	21, 556
BmtI	GCTAGC	1 cut(s)	51
BmuI	ACTGGG	2 cut(s)	21, 556
BpiI	GAAGAC	3 cut(s)	323, 334, 626
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	256, 805
BsaWI	WCCGGW	2 cut(s)	128, 392
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 967, 997
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 477, 877, 940, 1007
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	16, 164, 562
Bse3DI	GCAATG	1 cut(s)	488
BseAI	TCCGGA	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	256, 805
BseGI	GGATG	2 cut(s)	467, 684
BseLI	CCNNNNNNNGG	5 cut(s)	278, 477, 877, 940, 1007
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	835, 872
BseNI	ACTGG	3 cut(s)	16, 164, 562
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	38, 286
BshFI	GGCC	2 cut(s)	44, 780
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	11, 211
BsiHKCI	CYCGRG	1 cut(s)	748
BsiSI	CCGG	2 cut(s)	129, 393
BslFI	GGGAC	2 cut(s)	301, 616
BslI	CCNNNNNNNGG	5 cut(s)	278, 477, 877, 940, 1007
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	301, 616
BsnI	GGCC	2 cut(s)	44, 780
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	2 cut(s)	11, 211
Bsp13I	TCCGGA	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	147, 655
BspACI	CCGC	3 cut(s)	45, 272, 825
BspANI	GGCC	2 cut(s)	44, 780
BspCNI	CTCAG	2 cut(s)	834, 871
BspEI	TCCGGA	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	562
BspOI	GCTAGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	16, 164, 562
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	256, 805
BssMI	GATC	2 cut(s)	147, 655
BssT1I	CCWWGG	2 cut(s)	256, 805
Bst4CI	ACNGT	3 cut(s)	178, 315, 918
BstC8I	GCNNGC	2 cut(s)	49, 211
BstDEI	CTNAG	3 cut(s)	218, 821, 858
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	467, 684
BstKTI	GATC	2 cut(s)	150, 658
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	147, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	2 cut(s)	341, 609
BstPI	GGTNACC	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	38, 286
BstV2I	GAAGAC	3 cut(s)	323, 334, 626
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	44, 780
BtsCI	GGATG	2 cut(s)	467, 684
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	4 cut(s)	9, 461, 532, 914
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	49, 211
CciI	TCATGA	1 cut(s)	864
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	315, 458
Csp6I	GTAC	2 cut(s)	609, 981
CspAI	ACCGGT	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	4 cut(s)	338, 606, 844, 865
CviQI	GTAC	2 cut(s)	609, 981
DdeI	CTNAG	3 cut(s)	218, 821, 858
DpnI	GATC	2 cut(s)	149, 657
DpnII	GATC	2 cut(s)	147, 655
DraIII	CACNNNGTG	2 cut(s)	918, 920
DriI	GACNNNNNGTC	2 cut(s)	313, 726
EaeI	YGGCCR	1 cut(s)	42
Eam1105I	GACNNNNNGTC	2 cut(s)	313, 726
Eco130I	CCWWGG	2 cut(s)	256, 805
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	315, 458
Eco88I	CYCGRG	1 cut(s)	748
Eco91I	GGTNACC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	256, 805
ErhI	CCWWGG	2 cut(s)	256, 805
FaeI	CATG	4 cut(s)	341, 609, 847, 868
FaqI	GGGAC	2 cut(s)	301, 616
FatI	CATG	4 cut(s)	337, 605, 843, 864
FauNDI	CATATG	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	45, 52, 275
FokI	GGATG	2 cut(s)	454, 671
Fsp4HI	GCNGC	3 cut(s)	45, 52, 275
FspBI	CTAG	6 cut(s)	48, 278, 806, 872, 909, 978
GluI	GCNGC	3 cut(s)	45, 52, 275
HaeIII	GGCC	2 cut(s)	44, 780
HapII	CCGG	2 cut(s)	129, 393
Hin1II	CATG	4 cut(s)	341, 609, 847, 868
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	5 cut(s)	222, 308, 359, 409, 893
HpaII	CCGG	2 cut(s)	129, 393
HphI	GGTGA	5 cut(s)	60, 76, 118, 143, 452
Hpy166II	GTNNAC	5 cut(s)	28, 165, 209, 461, 553
Hpy188I	TCNGA	2 cut(s)	675, 987
Hpy188III	TCNNGA	2 cut(s)	393, 865
Hpy8I	GTNNAC	5 cut(s)	28, 165, 209, 461, 553
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	449, 767, 791
HpyCH4III	ACNGT	3 cut(s)	178, 315, 918
HpyCH4V	TGCA	3 cut(s)	183, 209, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	218, 821, 858
Hsp92II	CATG	4 cut(s)	341, 609, 847, 868
Kpn2I	TCCGGA	1 cut(s)	392
Kzo9I	GATC	2 cut(s)	147, 655
LpnPI	CCDG	8 cut(s)	142, 145, 340, 406, 557, 575, 585, 882
Lsp1109I	GCAGC	2 cut(s)	38, 286
MaeI	CTAG	6 cut(s)	48, 278, 806, 872, 909, 978
MaeIII	GTNAC	8 cut(s)	131, 140, 196, 223, 350, 515, 680, 718
MalI	GATC	2 cut(s)	149, 657
MboI	GATC	2 cut(s)	147, 655
MboII	GAAGA	6 cut(s)	323, 334, 404, 626, 691, 793
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	11, 211
MluCI	AATT	5 cut(s)	264, 433, 640, 706, 961
MlyI	GAGTC	3 cut(s)	231, 302, 353
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	5 cut(s)	147, 248, 279, 374, 426
MroI	TCCGGA	1 cut(s)	392
MseI	TTAA	6 cut(s)	566, 666, 926, 954, 965, 1018
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	825
MspI	CCGG	2 cut(s)	129, 393
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	2 cut(s)	147, 655
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	341, 609, 847, 868
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	4 cut(s)	131, 223, 680, 718
NspI	RCATGY	2 cut(s)	341, 609
PagI	TCATGA	1 cut(s)	864
PciI	ACATGT	2 cut(s)	337, 605
PfeI	GAWTC	2 cut(s)	409, 893
PflMI	CCANNNNNTGG	1 cut(s)	477
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	46, 53, 276
PleI	GAGTC	3 cut(s)	230, 302, 353
PpsI	GAGTC	3 cut(s)	230, 302, 353
PscI	ACATGT	2 cut(s)	337, 605
PspEI	GGTNACC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	315, 458
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	2 cut(s)	610, 982
RsaNI	GTAC	2 cut(s)	609, 981
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	6 cut(s)	566, 666, 926, 954, 965, 1018
SatI	GCNGC	3 cut(s)	45, 52, 275
Sau3AI	GATC	2 cut(s)	147, 655
Sau96I	GGNCC	2 cut(s)	315, 458
ScaI	AGTACT	1 cut(s)	982
SchI	GAGTC	3 cut(s)	231, 302, 353
SduI	GDGCHC	2 cut(s)	11, 211
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	315, 458
SmiMI	CAYNNNNRTG	1 cut(s)	716
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	5 cut(s)	264, 433, 640, 706, 961
SsiI	CCGC	3 cut(s)	45, 272, 825
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	6 cut(s)	48, 278, 806, 872, 909, 978
StyI	CCWWGG	2 cut(s)	256, 805
TaaI	ACNGT	3 cut(s)	178, 315, 918
TasI	AATT	5 cut(s)	264, 433, 640, 706, 961
TatI	WGTACW	2 cut(s)	608, 980
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	409, 893
Tru1I	TTAA	6 cut(s)	566, 666, 926, 954, 965, 1018
Tru9I	TTAA	6 cut(s)	566, 666, 926, 954, 965, 1018
TscAI	CASTG	4 cut(s)	16, 468, 532, 921
TseFI	GTSAC	4 cut(s)	131, 223, 680, 718
TseI	GCWGC	2 cut(s)	51, 274
Tsp45I	GTSAC	4 cut(s)	131, 223, 680, 718
TspDTI	ATGAA	1 cut(s)	881
TspRI	CASTG	4 cut(s)	16, 468, 532, 921
Van91I	CCANNNNNTGG	1 cut(s)	477
VneI	GTGCAC	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	315, 458
XapI	RAATTY	2 cut(s)	433, 640
XceI	RCATGY	2 cut(s)	341, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XmaJI	CCTAGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	6 cut(s)	48, 278, 806, 872, 909, 978
ZrmI	AGTACT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.