Rroxscaffold_1G00070240

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
91081099 .. 91081740
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070240.1

Sequence Viewer

Length: 282 bp
ATGCTACAAGAGGGGAAGGAAATAGCTGTAAAAAGACTATCTAGTAGCTCAGGACAAGGCATTGAAGAGTTCAAGAATGAGATGCTGTTGATCTCCAATCTTCAACACAAAAATCTTGTTAGGATCATGGGTTGTTGCGTTAAAGAGGATGAGAAGTTGCTGGTTTATGAGTTCATGCCGAACAAAAGCTTGGATACGTTTCTATTCGGCCACCCGCAACCACGGGGCCCTGATGGGTCTCTTTCTGGCAACCCTAACATAAGGTGTGTTACTGTGTTGTAA

Protein Analysis

93

Amino Acids

10.41

Weight (kDa)

6.72

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 71 8.5e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 4 - 68 3.1e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 208
AgsI TTSAA 3 cut(s) 65, 73, 104
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 26, 48, 189
AluI AGCT 3 cut(s) 26, 48, 189
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 131
AoxI GGCC 2 cut(s) 208, 226
ApaI GGGCCC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 226, 227
BaeGI GKGCMC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 230
BccI CCATC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 42
BfuI GTATCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 226, 227
BmiI GGNNCC 2 cut(s) 227, 228
BmsI GCATC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 230
BshFI GGCC 2 cut(s) 210, 228
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 210, 228
Bso31I GGTCTC 1 cut(s) 243
Bsp120I GGGCCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 90, 123
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 210, 228
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 227, 228
BspPI GGATC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 90, 123
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 93, 126
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 90, 123
BstSLI GKGCMC 1 cut(s) 230
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 210, 228
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 226, 227
CviAII CATG 2 cut(s) 127, 175
CviJI RGCY 5 cut(s) 26, 48, 189, 210, 228
CviKI_1 RGCY 5 cut(s) 26, 48, 189, 210, 228
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 92, 125
DpnII GATC 2 cut(s) 90, 123
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 243
EcoO109I RGGNCCY 2 cut(s) 226, 227
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 2 cut(s) 130, 178
FaiI YATR 4 cut(s) 128, 168, 176, 260
FatI CATG 2 cut(s) 126, 174
FauI CCCGC 1 cut(s) 222
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 230
FspBI CTAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 210, 228
Hin1II CATG 2 cut(s) 130, 178
HindIII AAGCTT 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 51, 73
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 2 cut(s) 130, 178
Kzo9I GATC 2 cut(s) 90, 123
LpnPI CCDG 4 cut(s) 36, 146, 231, 243
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 92, 125
MboI GATC 2 cut(s) 90, 123
MboII GAAGA 2 cut(s) 77, 92
MhlI GDGCHC 1 cut(s) 230
MnlI CCTC 2 cut(s) 4, 139
MseI TTAA 1 cut(s) 141
NdeII GATC 2 cut(s) 90, 123
NlaIII CATG 2 cut(s) 130, 178
NlaIV GGNNCC 2 cut(s) 227, 228
PspN4I GGNNCC 2 cut(s) 227, 228
PspOMI GGGCCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 226, 227
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 2 cut(s) 90, 123
Sau96I GGNCC 2 cut(s) 226, 227
SduI GDGCHC 1 cut(s) 230
SetI ASST 5 cut(s) 28, 50, 191, 200, 266
SfaNI GCATC 1 cut(s) 72
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 200
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 163
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.